Gene omics information

Query gene ID	Zm.8578.2.A1_at
Gene name	hypothetical protein LOC100278807
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.8578.2.A1_at	BM347528	hypothetical protein LOC100278807	-	8e+0	At3g06120	MUTE (MUTE)	S.X.	H.G.	Please select
0.53	69.1	Zm.16537.3.S1_a_at	CA404068	hypothetical protein LOC100273170	-	2e-22	At3g04770	RPSAb (40S ribosomal protein SA B)	S.X.	H.G.	Please select
0.35	38.9	Zm.7012.9.A1_at	BE123180	-	-	3e+0	At2g27510	ATFD3 (ferredoxin 3)	S.X.	H.G.	Please select
0.32	33.4	Zm.3075.1.A1_at	CO520772	thymidylate kinase	-	2e+1	At3g61829	unknown protein	S.X.	H.G.	Please select
0.26	22.7	Zm.4143.1.A1_at	BQ779421	monooxygenase/ oxidoreductase	-	1e-10	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.25	21.3	Zm.401.1.A1_at	AF038586.1	pyruvate dehydrogenase kinase isoform 2	-	1e-11	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.6	99.6	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
22.5	99.5	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
20.0	99.3	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
18.4	99.2	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
14.7	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	5e-67	254	Zm.1323.1.S1_x_at	AY107806.1	hypothetical protein LOC100275312	-	6e+0	At3g30840	unknown protein	C.G.	S.X.	Please select
0.29	5e-67	254	Zm.1323.1.S1_at	AY107806.1	hypothetical protein LOC100275312	-	6e+0	At3g30840	unknown protein	C.G.	S.X.	Please select
0.32	3e-62	238	Zm.8578.1.A1_at	BM335222	hypothetical protein LOC100275664	-	3e-1	At1g23710	unknown protein	C.G.	S.X.	Please select
0.29	1e-55	216	Zm.15871.2.A1_at	AI668188	hypothetical protein LOC100216742	-	8e-1	At2g04515	unknown protein	C.G.	S.X.	Please select
0.29	1e-55	216	Zm.15871.2.S1_at	AI668188	Hypothetical protein LOC100216742	-	8e-1	At2g04515	unknown protein	C.G.	S.X.	Please select
0.26	7e-54	210	Zm.8578.3.S1_at	BI431120	hypothetical protein LOC100279095	-	6e-3	At1g23710	unknown protein	C.G.	S.X.	Please select
0.26	7e-54	210	Zm.8578.3.S1_s_at	BI431120	hypothetical protein LOC100275312	-	6e-3	At1g23710	unknown protein	C.G.	S.X.	Please select
0.26	3e-50	198	Zm.15860.1.A1_at	BM073859	-	-	5e+0	At2g17180	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.24	2e-44	178	Zm.9535.1.A1_x_at	BM075999	-	-	5e+0	At5g56470	FAD-dependent oxidoreductase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At3g06120	819785	MUTE (MUTE)	Encodes a basic helix-loop-helix (bHLH) protein that controls meristemoid differentiation during stomatal development. In the absence of MUTE, meristemoids abort after excessive asymmetric divisions and fail to differentiate stomata.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+1	32	Glycine max	PsAffx.psMA002xD16f_at	PsAffx.psMA002xD16f	-	-	4e+0	At3g02430	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Hordeum vulgare	HY07E07V_at	HY07E07V	-	-	1e+0	At5g64400	-	C.G.	S.X.	Please select
0.03	2e+1	32	Oryza sativa	OsAffx.591.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.212626.1.S1_at	pmrna24717	hypothetical protein	-	3e+0	At5g04490	VTE5 (vitamin E pathway gene5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	4e-2	40	Triticum aestivum	Ta.17449.1.S1_at	CA620972	-	-	1e+1	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1617324_at	CF206573.1	hypothetical protein LOC100248010	-	3e-2	At1g80360	aminotransferase class I and II family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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