Gene omics information

Query gene ID	Zm.8576.1.A1_at
Gene name	caffeic acid 3-O-methyltransferase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.8576.1.A1_at	BM074724	caffeic acid 3-O-methyltransferase	-	4e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.10123.1.S1_at	BM380717	heat- and acid-stable phosphoprotein	-	3e-14	At5g46020	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.522.1.S1_at	AF200531.1	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	S.X.	H.G.	Please select
0.38	44.2	Zm.9194.1.A1_at	BM267243	-	-	1e+0	At3g03456	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.4401.1.A1_at	AY108702.1	YGL010w-like protein	-	9e+0	At5g59360	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.2602.1.S1_at	AY109922.1	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-4	46	Zm.508.1.S1_at	CA401738	hypothetical protein LOC100191390	-	3e-26	At5g20940	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.6995.2.A1_a_at	BG873820	prefoldin subunit 3 /// prefoldin subunit 3	-	7e-3	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.6995.2.A1_at	BG873820	prefoldin subunit 3	-	7e-3	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.6840.1.S1_at	CD447938	40S ribosomal protein S26	-	1e-10	At2g40590	40S ribosomal protein S26 (RPS26B)	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.4894.1.A1_at	BM076024	-	-	1e+0	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3406.1.S1_at	AY566301.1	4-coumarate coenzyme A ligase	-	7e-2	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.19036.1.S1_at	CA402843	hypothetical protein LOC100272946	-	3e-4	At2g32770	purple acid phosphatase (PAP13)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.10825.1.A1_at	CF629429	O-methyltransferase BX7	-	8e-1	At3g13594	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.10825.1.A2_at	BQ619394	O-methyltransferase BX7 /// IDP478 protein	-	8e-1	At3g13594	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-2	40	Arabidopsis thaliana	At5g54160	835504	ATOMT1 (O-METHYLTRANSFERASE 1)	A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3’-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3’-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-7	57	Glycine max	GmaAffx.32612.1.S1_at	BU762383	-	-	3e+0	At5g47229	unknown protein	C.G.	S.X.	Please select
0.50	5e-148	523	Hordeum vulgare	Contig14539_at	Contig14539	-	-	1e-1	At3g53140	O-diphenol-O-methyl transferase, putative	C.G.	S.X.	Please select
0.62	8e-138	492	Oryza sativa	Os02g0823400	AK105029.2	-	S-adenosyl-L-methionine: beta-alanineN-methyltransferase (Fragment)	1e-2	At3g53140	O-diphenol-O-methyl transferase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-2	42	Populus trichocarpa	Ptp.3984.1.A1_at	CV242251	beta-alanine n-methyltransferase related	-	5e-20	At3g53140	O-diphenol-O-methyl transferase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	4e-138	492	Triticum aestivum	Ta.1846.1.S1_x_at	BE446675	-	-	2e-1	At3g53140	O-diphenol-O-methyl transferase, putative	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1619682_x_at	CF205002.1	-	-	3e-45	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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