Gene omics information

Query gene ID	Zm.854.1.A1_at
Gene name	vesicle-associated membrane protein-associated protein A
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.854.1.A1_at	AW066950	vesicle-associated membrane protein-associated protein A	-	1e-2	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.83	95.6	Zm.5767.1.A1_at	AI714844	hypothetical protein LOC100273619	-	8e-2	At3g53850	-	S.X.	H.G.	Please select
0.80	94.0	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.1284.1.S1_at	BE344880	-	-	1e+1	At5g50760	auxin-responsive family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.18486.1.A1_at	AW461085	hypothetical protein LOC100276684	-	1e-1	At2g47760	ALG3	S.X.	H.G.	Please select
0.32	33.4	Zm.17270.1.S1_a_at	AF371274.1	zein-alpha precursor	-	5e-1	At1g06070	bZIP transcription factor, putative (bZIP69)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	95.7	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.6	95.2	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.1	94.3	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.8	93.5	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-3	42	Zm.1488.1.S1_at	BM079309	seven-transmembrane-domain protein 1	-	2e-7	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.8580.1.A1_at	CB350666	hypothetical protein LOC100191705	-	2e-3	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.5550.1.S1_at	AI622648	hypothetical protein LOC100280363	-	2e-7	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.16016.1.A1_at	CO527167	hypothetical protein LOC100272987	-	7e-25	At5g42090	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.13422.1.A1_at	CD946114	hypothetical protein LOC100217229	-	6e-1	At5g47180	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.12297.1.A1_at	CK347346	CONSTANS-like protein CO8	-	2e-1	At5g39740	60S ribosomal protein L5 (RPL5B)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6069.2.S1_at	CO530423	-	-	9e-9	At3g57490	40S ribosomal protein S2 (RPS2D)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.607.1.A1_at	AF326495.1	plasma membrane integral protein ZmPIP2-6	-	2e-25	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5351.1.S1_at	AI619365	-	-	5e-1	At1g56200	emb1303 (embryo defective 1303)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-2	42	Arabidopsis thaliana	At4g00170	828017	vesicle-associated membrane family protein / VAMP family protein	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-5	50	Glycine max	Gma.733.2.S1_a_at	AW703939	-	-	2e-7	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.40	1e-105	383	Hordeum vulgare	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select
0.45	7e-98	359	Oryza sativa	Os08g0155100	AK069865.1	-	Major sperm protein domain containing protein	1e-8	At4g00170	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-6	56	Populus trichocarpa	PtpAffx.203016.1.S1_at	pmrna5965	hypothetical protein	-	7e-10	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	1e-85	317	Triticum aestivum	Ta.3084.1.S1_at	BQ166296	vesicle-associated membrane protein-associated protein	-	6e-1	At4g00170	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select
0.10	4e-12	71	Vitis vinifera	1614649_s_at	CB349953	hypothetical protein LOC100253897	-	1e-29	At4g00170	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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