Gene omics information

Query gene ID	Zm.8525.1.A1_at
Gene name	pnFL-2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.8525.1.A1_at	BM074538	pnFL-2	-	1e-1	At3g22275	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.14592.1.A1_at	AY109104.2	protein phosphatase 2C containing protein	-	2e+0	At1g23147	RALFL3 (RALF-LIKE 3)	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.601.1.S1_at	AI715029	-	-	8e-1	At1g35430	unknown protein	S.X.	H.G.	Please select
0.15	8.6	ZmAffx.106.1.A1_at	AI665540	-	-	3e+0	At4g14060	major latex protein-related / MLP-related	S.X.	H.G.	Please select
0.10	4.6	Zm.9768.1.A1_at	BM338514	hypothetical protein LOC100273687	-	3e-2	At1g29730	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	S.X.	H.G.	Please select
0.08	3.4	Zm.4036.1.A1_at	CD994340	tyrosine specific protein phosphatase family protein	-	1e-11	At1g05000	tyrosine specific protein phosphatase family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.7	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
11.2	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM253261	ZM_2d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.8	97.6	GSM253260	ZM_2d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.4	97.5	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.2	97.4	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	9e-13	73	Zm.10850.1.A1_at	AY106263.1	-	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	C.G.	S.X.	Please select
0.08	9e-13	73	Zm.10850.1.S1_at	AY106263.1	ZIM motif family protein	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	C.G.	S.X.	Please select
0.05	9e-7	54	Zm.3635.1.A1_at	CF630819	IDP204 protein	-	2e-1	At1g70700	TIFY7	C.G.	S.X.	Please select
0.03	5e-5	48	Zm.3225.1.S1_at	BE512131	hypothetical protein LOC100191257	-	2e-3	At1g74950	TIFY10B	C.G.	S.X.	Please select
0.05	2e-4	46	Zm.17088.1.A1_at	BM497690	pnFL-2	-	4e-2	At1g19180	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.9617.1.A1_at	BM337585	-	-	5e+0	At4g26670	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.03	5e-2	38	Zm.6569.2.S1_a_at	AY107413.1	hypothetical protein LOC100276303	-	1e+0	At3g59900	ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.2809.1.A1_at	CO519154	Zn-finger, RanBP-type, containing protein	-	5e+0	At5g42905	nucleic acid binding / ribonuclease H	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.17936.1.S1_at	CO518729	protein binding protein	-	6e-14	At3g47990	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At3g22275	5008022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-2	40	Glycine max	PsAffx.C2000207_at	PsAffx.C2000207	-	-	5e-1	At3g29075	glycine-rich protein	C.G.	S.X.	Please select
0.05	7e-11	67	Hordeum vulgare	Contig11225_at	Contig11225	-	-	7e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	C.G.	S.X.	Please select
0.23	3e-19	97	Oryza sativa	Os03g0180900	AK073589.1	-	ZIM domain containing protein	1e-1	At3g22275	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.92178.2.S1_s_at	CV271561	hypothetical protein	-	4e+0	At5g60680	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	1e-17	91	Triticum aestivum	Ta.14172.1.S1_at	CA643444	-	-	1e+1	At3g04880	DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)	C.G.	S.X.	Please select
0.02	1e-1	36	Vitis vinifera	1606789_at	CF415022	similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	-	7e-83	At4g34720	AVA-P1	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage