Gene omics information

Query gene ID	Zm.8514.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.8514.1.S1_at	AY104758.1	-	-	5e+0	At5g35525	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.53	69.1	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	S.X.	H.G.	Please select
0.50	65.7	Zm.5592.1.S1_at	AY111384.1	-	-	9e-2	At5g66052	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.250.1.S1_at	CF007330	basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097	-	5e+0	At3g06000	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.3657.1.A1_s_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.8	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.8	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.5	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.4	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	1191	Zm.8514.1.A1_at	AY104758.1	PREG-like protein	-	5e+0	At5g35525	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.6303.1.S1_at	AF064707.1	-	-	8e-27	At5g20950	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.4250.1.A1_at	T18710	autophagy-related 3	-	8e-13	At5g61500	ATG3	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.17956.1.A1_at	CF637428	-	-	2e+0	At3g20570	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.510.1.A1_at	AI692008	hypothetical protein LOC100273006	-	3e+0	At4g14380	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4496.1.A1_at	AY112137.1	hypothetical protein LOC100275632	-	9e-2	At2g35800	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3632.1.S1_at	CF627896	KED-like protein /// cylicin-1	-	2e-1	At3g05060	SAR DNA-binding protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g35525	833517	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.81472.1.S1_at	AW570625	-	-	8e-11	At2g44740	CYCP4	C.G.	S.X.	Please select
0.24	2e-47	188	Hordeum vulgare	Contig8649_at	Contig8649	-	-	2e+0	At2g33030	AtRLP25 (Receptor Like Protein 25)	C.G.	S.X.	Please select
0.21	3e-58	226	Oryza sativa	Os05g0398000	AK070478.1	-	Cyclin, N-terminal domain containing protein	7e-2	At5g07450	CYCP4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-3	44	Populus trichocarpa	PtpAffx.144614.1.S1_at	CX174618	hypothetical protein	-	1e-13	At5g61650	CYCP4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	6e-114	410	Triticum aestivum	Ta.12863.1.S1_at	CD491597	-	-	6e-3	At3g63120	CYCP1	C.G.	S.X.	Please select
0.02	6e+0	30	Vitis vinifera	1613577_at	CB975267	-	-	3e-1	At1g07980	NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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