Gene omics information

Query gene ID	Zm.8490.1.A1_at
Gene name	hypothetical protein LOC100277467
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.8490.1.A1_at	CB351020	hypothetical protein LOC100277467	-	4e+0	At2g23290	AtMYB70 (myb domain protein 70)	S.X.	H.G.	Please select
0.43	52.8	Zm.3783.1.S1_at	AW331211	Betaine aldehyde dehydrogenase	-	6e-4	At3g48170	ALDH10A9	S.X.	H.G.	Please select
0.40	48.5	Zm.5115.1.A1_at	AI600917	hypothetical protein LOC100272658	-	2e-46	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	S.X.	H.G.	Please select
0.36	41.3	Zm.6141.1.S1_at	CA399949	MAPK	-	4e-15	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	S.X.	H.G.	Please select
0.35	38.9	ZmAffx.824.1.S1_at	AI770504	-	-	3e+0	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.32	33.4	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	S.X.	H.G.	Please select
0.31	31.6	Zm.18109.1.S1_at	AI881274	-	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.29	28.1	ZmAffx.963.1.A1_at	AI833792	-	-	8e-1	At4g04620	ATG8B (autophagy 8b)	S.X.	H.G.	Please select
0.27	24.6	Zm.18038.1.S1_at	CD219308	-	-	2e+1	At5g66700	HB53	S.X.	H.G.	Please select
0.25	21.3	Zm.8752.1.A1_at	AY107176.1	hypothetical protein LOC100278587	-	4e-2	At2g32260	cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.4	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM258184	Mo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	6e-25	113	Zm.10509.1.S1_at	AW055907	-	-	4e-1	At3g61980	serine protease inhibitor, Kazal-type family protein	C.G.	S.X.	Please select
0.09	6e-16	83	Zm.6017.1.A1_at	AI666208	hypothetical protein LOC100274747 /// hypothetical protein LOC100277021	-	2e+0	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.12	8e-12	69	ZmAffx.955.1.S1_at	AI833505	-	-	8e-1	At2g47480	unknown protein	C.G.	S.X.	Please select
0.12	8e-12	69	ZmAffx.955.1.A1_at	AI833505	-	-	8e-1	At2g47480	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.3996.1.S1_at	CD436900	hypothetical protein LOC100274383	-	2e-11	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.8973.1.S1_a_at	CF058354	hypothetical protein LOC100191732	-	2e-2	At2g18770	signal recognition particle binding	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.8108.1.A1_at	BM381912	-	-	4e-4	At5g15080	protein kinase, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.6741.1.A1_at	AI396113	hypothetical protein LOC100275507	-	6e+0	At5g60330	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.9389.3.A1_at	CF633932	-	-	4e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At2g23290	816861	AtMYB70 (myb domain protein 70)	Member of the R2R3 factor gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-1	36	Glycine max	PsAffx.C10000114_at	PsAffx.C10000114	-	-	2e+0	At1g04250	AXR3 (AUXIN RESISTANT 3)	C.G.	S.X.	Please select
0.07	4e-5	48	Hordeum vulgare	Contig15704_at	Contig15704	-	-	9e-2	At3g33494	unknown protein	C.G.	S.X.	Please select
0.14	4e-20	99	Oryza sativa	Os07g0690200	AK108269.1	-	Conserved hypothetical protein	1e-1	At2g04063	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.146965.2.A1_at	CV256237	hypothetical protein	-	1e-33	At5g25060	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	4e-28	125	Triticum aestivum	TaAffx.7789.1.S1_at	CA649717	-	-	4e-2	At1g04778	unknown protein	C.G.	S.X.	Please select
0.03	2e-2	38	Vitis vinifera	1611288_at	CD800916	-	-	1e+0	At1g02330	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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