CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.8484.1.A1_at

Gene name hypothetical protein LOC100279952

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 55.7 Zm.8484.1.A1_at CD974829 hypothetical protein LOC100279952 - 9e-2 At5g42100 ATBG_PAP S.X. H.G.
0.75 90.8 Zm.15848.1.A1_a_at BQ539460 - - 1e-3 At5g07090 40S ribosomal protein S4 (RPS4B) S.X. H.G.
0.67 85.8 Zm.1585.1.S1_at CO519290 profilin 2 - 6e-16 At4g29340 PRF4 (PROFILIN 4) S.X. H.G.
0.67 85.8 Zm.2807.1.A1_at BM334793 zinc-finger protein 1 - 7e-1 At5g57345 unknown protein S.X. H.G.
0.55 71.6 Zm.6405.2.A1_a_at AI881398 LOL1 - 2e-1 At1g32540 LOL1 (LSD ONE LIKE 1) S.X. H.G.
0.43 52.8 Zm.819.1.S1_at H35893 - - 3e-1 At4g09030 AGP10 (ARABINOGALACTAN PROTEIN 10) S.X. H.G.
0.40 48.5 Zm.14934.1.A1_at CK986163 CHCH domain containing protein - 1e+0 At3g09032 unknown protein S.X. H.G.
0.40 48.5 Zm.2042.1.A1_a_at AY104437.1 protein arginine N-methyltransferase 1 - 2e-6 At4g29510 PRMT11 (ARGININE METHYLTRANSFERASE 11) S.X. H.G.
0.26 22.7 Zm.12394.1.S1_at AW519964 hypothetical protein LOC100279308 - 2e-8 At2g40550 ETG1 (E2F TARGET GENE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.4 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.3 96.1 GSM323170 Zm_SG200Dpep1_24hpi_I GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
4.0 95.8 GSM206298 Lower pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM375795 Deep-sowing 10d treatment Control, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.5 95.1 GSM206316 Upper pulvinus 60 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.5 95.1 GSM375797 Deep-sowing 10d treatment UCZ, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.4 94.9 GSM323171 Zm_SG200Dpep1_24hpi_II GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.4 94.9 GSM375796 Deep-sowing 10d treatment GA3, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.3 94.7 GSM323172 Zm_SG200Dpep1_24hpi_III GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.3 94.7 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-15 81 Zm.9925.1.A1_at BM348442 - - 3e-1 At2g40765 unknown protein C.G. S.X.
0.10 2e-13 75 Zm.16907.2.S1_at CK371534 - - 1e+0 At5g44130 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) C.G. S.X.
0.08 7e-10 63 Zm.14573.1.S1_at CO527252 glucan endo-1,3-beta-glucosidase 7 - 9e-1 At3g46570 glycosyl hydrolase family 17 protein C.G. S.X.
0.04 2e-3 42 Zm.12641.1.S1_at BU097542 glucan endo-1,3-beta-glucosidase - 9e-3 At3g55430 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative C.G. S.X.
0.03 4e-2 38 Zm.18352.1.S1_at CO527044 glucan endo-1,3-beta-glucosidase, acidic isoform - 1e+1 At5g62470 MYB96 (myb domain protein 96) C.G. S.X.
0.03 1e-1 36 Zm.10406.1.S1_at BQ279422 - - 5e+0 At5g35375 unknown protein C.G. S.X.
0.04 2e+0 32 ZmAffx.666.1.A1_at AI734351 - - 3e+0 At5g56795 MT1B C.G. S.X.
0.04 2e+0 32 ZmAffx.666.1.S1_at AI734351 - - 3e+0 At5g56795 MT1B C.G. S.X.
0.01 2e+0 32 Zm.98.1.S1_at AY106729.1 3-phosphoshikimate 1-carboxyvinyltransferase - 2e-48 At1g48860 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-2 38 Arabidopsis thaliana At5g42100 834215 ATBG_PAP encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd - - - C.G. S.X.
0.06 3e-8 59 Glycine max Gma.7092.1.S1_at CD396678 - - 5e-20 At5g55180 glycosyl hydrolase family 17 protein C.G. S.X.
0.27 2e-93 341 Hordeum vulgare Contig5219_s_at Contig5219 - - 3e-9 At5g42100 ATBG_PAP C.G. S.X.
0.23 1e-39 165 Oryza sativa Os04g0412300 AK110902.1 - Glycoside hydrolase, family 17 protein 3e+0 At5g42100 ATBG_PAP C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.219623.1.S1_at pmrna35585 hypothetical protein - 2e+1 At5g53940 yippee family protein C.G. S.X.
0.35 2e-58 226 Triticum aestivum TaAffx.7800.1.S1_at CA649489 - - 7e-2 At1g24200 paired amphipathic helix repeat-containing protein C.G. S.X.
0.11 3e-11 67 Vitis vinifera 1610324_a_at CB346041 hypothetical protein LOC100254667 - 8e-4 At5g42100 ATBG_PAP C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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