Gene omics information

Query gene ID	Zm.847.1.S1_at
Gene name	hypothetical protein LOC100274400
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.847.1.S1_at	L00973.1	hypothetical protein LOC100274400	-	1e-1	At1g02360	chitinase, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.16532.1.A1_a_at	BM074770	60S ribosomal protein L18a	-	5e-44	At2g34480	60S ribosomal protein L18A (RPL18aB)	S.X.	H.G.	Please select
0.50	65.7	Zm.7914.1.A1_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.7757.1.S1_at	BM079780	mitochondrion protein	-	2e-11	At5g37530	thiF family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.9659.1.A1_at	BM350799	-	-	4e-1	At1g69510	-	S.X.	H.G.	Please select
0.44	55.7	Zm.9004.1.S1_at	BM074268	hypothetical protein LOC100194029	-	6e-4	At2g37660	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
58.7	100.0	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
34.6	99.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
19.2	99.3	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
17.8	99.1	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
16.9	99.1	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
10.6	98.4	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
8.9	98.2	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.3	96.9	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-109	395	Zm.11654.1.A1_at	CK347373	hypothetical protein LOC100280135	-	1e-5	At3g54420	ATEP3	C.G.	S.X.	Please select
0.11	1e-24	113	Zm.201.1.A1_at	L16798.1	class I acidic chitinase	-	8e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.38	1e-24	113	Zm.201.1.S1_at	L16798.1	class I acidic chitinase	-	8e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.12	1e-12	73	Zm.16805.3.S1_at	BM381902	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.12	1e-12	73	Zm.16805.3.S1_a_at	BM381902	hypothetical protein LOC100191592	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.12	1e-12	73	Zm.16805.3.S1_x_at	BM381902	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.08	4e-12	71	Zm.1595.1.S1_at	CD967190	endochitinase A	-	6e-1	At3g54420	ATEP3	C.G.	S.X.	Please select
0.15	7e-11	67	Zm.16805.8.S1_at	BG837630	hypothetical protein LOC100191592	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.11	2e-2	40	Zm.12391.1.S1_at	CF349132	endochitinase PR4	-	1e-1	At3g54420	ATEP3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	38	Arabidopsis thaliana	At1g02360	837724	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	PsAffx.psHB040xC23f_at	PsAffx.psHB040xC23f	-	-	2e+1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.52	2e-45	182	Hordeum vulgare	Contig7001_at	Contig7001	-	-	2e-1	At1g02360	chitinase, putative	C.G.	S.X.	Please select
0.52	2e-39	165	Oryza sativa	Os06g0726100	Z29962.1	-	Endochitinase precursor (EC 3.2.1.14)	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.223855.1.S1_x_at	pmrna42074	hypothetical protein	-	8e-1	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	2e-40	167	Triticum aestivum	Ta.21342.1.S1_x_at	AB029936.1	Chitinase 3	-	1e+1	At4g35770	SEN1 (SENESCENCE 1)	C.G.	S.X.	Please select
0.07	3e-3	42	Vitis vinifera	1608262_at	AF053341.1	class I extracellular chitinase	-	2e+0	At3g04180	germin-like protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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