Gene omics information

Query gene ID	Zm.8383.1.A1_at
Gene name	PCO062666 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.8383.1.A1_at	BM078678	PCO062666 protein	-	4e-1	At5g47960	ATRABA4C	S.X.	H.G.	Please select
0.77	92.1	Zm.12152.1.S1_at	CK394699	hypothetical protein LOC100274505	-	1e-5	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	S.X.	H.G.	Please select
0.73	89.9	Zm.15448.1.S1_at	CD448349	plastidic phosphate translocator-like protein1	-	4e-24	At4g32390	phosphate translocator-related	S.X.	H.G.	Please select
0.61	79.5	Zm.16892.1.A1_at	CO520304	calmodulin binding protein	-	2e-2	At3g22190	IQD5 (IQ-domain 5)	S.X.	H.G.	Please select
0.60	77.8	Zm.9088.1.A1_at	CB350848	-	-	1e+0	At2g06908	unknown protein	S.X.	H.G.	Please select
0.59	76.1	Zm.2940.1.A1_at	AW360572	-	-	4e-5	At1g56500	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.5	99.0	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
11.6	98.6	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
11.4	98.5	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
9.6	98.3	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	1e-57	222	Zm.8736.1.S1_at	BQ538695	-	-	7e-1	At3g09800	protein binding	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.1306.1.A1_at	AY111772.1	-	-	1e-3	At2g28790	osmotin-like protein, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.1306.1.S1_at	AY111772.1	osmotin-like protein	-	1e-3	At2g28790	osmotin-like protein, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5805.1.A1_at	AY105892.1	filamentation temperature-sensitive H 2A	-	3e-69	At2g30950	VAR2 (VARIEGATED 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5805.2.A1_a_at	AI649736	filamentation temperature-sensitive H 2A /// filamentation temperature-sensitive H 2B	-	2e-56	At1g06430	FTSH8	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.12919.1.A1_at	BG320956	aminotransferase y4uB	-	1e-1	At3g22200	POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.8538.1.S1_at	AW067375	hypothetical protein LOC100278938	-	5e-13	At3g23690	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	1e+1	30	Zm.6981.1.A1_at	AI065915	-	-	2e-1	At1g34065	SAMC2 (S-adenosylmethionine carrier 2)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.5861.1.A1_at	CD437163	hypothetical protein LOC100272371	-	5e-67	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At5g47960	834847	ATRABA4C	Encodes a small molecular weight g-protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	PsAffx.CL57Contig2_s_at	PsAffx.CL57Contig2	-	-	3e-4	At1g77930	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.19	6e-17	87	Hordeum vulgare	Contig9758_s_at	Contig9758	-	-	6e+0	At3g10400	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.14	3e-28	127	Oryza sativa	Os.5024.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e+0	32	Populus trichocarpa	PtpAffx.224379.1.S1_s_at	pmrna42854	hypothetical protein	-	6e-10	At4g10270	wound-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	2e-147	521	Triticum aestivum	TaAffx.57663.1.S1_at	CA626172	-	-	4e+0	At1g67430	60S ribosomal protein L17 (RPL17B)	C.G.	S.X.	Please select
0.02	7e+0	30	Vitis vinifera	1618486_at	CF568886	-	-	6e-30	At2g29550	TUB7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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