Gene omics information

Query gene ID	Zm.8378.1.A1_at
Gene name	hypothetical protein LOC100273227
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.39	45.6	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	S.X.	H.G.	Please select
0.67	85.8	Zm.16195.1.A1_at	BM080827	-	-	7e-1	At3g60270	uclacyanin, putative	S.X.	H.G.	Please select
0.61	79.5	Zm.6975.1.S1_at	AW066660	hypothetical protein LOC100272316	-	4e-40	At3g20050	ATTCP-1	S.X.	H.G.	Please select
0.53	69.1	Zm.2922.1.A1_at	CO532813	-	-	9e+0	At4g21865	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.10162.1.A1_at	AW155725	-	-	3e-1	At3g57230	AGL16 (AGAMOUS-LIKE 16)	S.X.	H.G.	Please select
0.44	55.7	Zm.14149.1.A1_at	AY111524.1	-	-	1e+0	At5g55135	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.4278.1.A1_at	AI834022	hypothetical protein LOC100279402	-	1e+1	At5g05550	transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	95.8	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.6	95.2	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.6	95.2	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.3	94.7	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.1	94.3	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.0	94.0	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206295	Lower pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.9	93.8	GSM206289	Upper pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	1e-103	375	Zm.15736.1.S1_at	CA401648	hypothetical protein LOC100276743	-	5e-11	At2g25910	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.15513.1.S1_at	AW330819	-	-	8e-2	At5g58190	ECT10	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.2863.1.A1_at	CO524360	hypothetical protein LOC100272951 /// hypothetical protein LOC100279954	-	4e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.12148.1.S1_at	BM351623	small nuclear ribonucleoprotein Sm D1	-	3e-8	At4g02840	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9469.1.A1_at	BM269128	-	-	2e+1	At3g21610	-	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6088.1.A1_at	BM338924	mitochondrial glycoprotein	-	1e-2	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5641.1.A1_at	AI629775	Na+/H+ antiporter, probable CP0838	-	1e-47	At3g19490	ATNHD1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2380.1.A1_at	AW520012	tubulin--tyrosine ligase-like protein 12	-	6e-1	At1g77550	protein binding / tubulin-tyrosine ligase	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12742.1.A1_at	CD440044	prefoldin subunit 2	-	1e-1	At1g68490	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At3g26860	822302	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	GmaAffx.66140.1.S1_at	BF423984	-	-	2e-12	At3g10230	LYC (LYCOPENE CYCLASE)	C.G.	S.X.	Please select
0.43	7e-41	167	Hordeum vulgare	HY03N17u_s_at	HY03N17u	-	-	2e-1	At3g19560	F-box family protein	C.G.	S.X.	Please select
0.43	1e-73	278	Oryza sativa	Os01g0566900	AK100223.1	-	3'-5' exonuclease domain containing protein	5e-14	At2g25910	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.204108.1.S1_s_at	pmrna8104	hypothetical protein	-	4e+0	At5g03440	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	5e-62	238	Triticum aestivum	Ta.9054.1.S1_a_at	CK199161	-	-	1e-11	At2g25910	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein	C.G.	S.X.	Please select
0.07	2e-6	52	Vitis vinifera	1608095_at	CF211950	hypothetical protein LOC100259526	-	2e-32	At2g25910	3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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