Gene omics information

Query gene ID	Zm.8376.1.S1_at
Gene name	hypothetical protein LOC100280303
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.8376.1.S1_at	BM073880	hypothetical protein LOC100280303	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	S.X.	H.G.	Please select
0.50	65.7	Zm.18047.1.S1_at	CF623859	hypothetical protein LOC100275732	-	2e+0	At5g42250	alcohol dehydrogenase, putative	S.X.	H.G.	Please select
0.31	31.6	Zm.5237.1.A1_at	AY107290.1	hypothetical protein LOC100273890	-	2e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please select
0.29	28.1	Zm.6569.9.A1_at	AW091447	40S ribosomal protein S15	-	6e-37	At5g09510	40S ribosomal protein S15 (RPS15D)	S.X.	H.G.	Please select
0.21	15.5	Zm.14473.2.A1_at	CK347999	hypothetical protein LOC100191612	-	8e-3	At1g74060	60S ribosomal protein L6 (RPL6B)	S.X.	H.G.	Please select
0.20	14.2	Zm.18446.1.A1_at	CO518758	-	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.5	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.4	97.0	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Zm.6431.1.A1_at	CO525297	hypothetical protein LOC100193964	-	3e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.12645.1.S1_at	BU097696	-	-	4e-4	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.4698.1.A1_at	AW120236	-	-	1e-11	At4g34270	TIP41-like family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.17080.1.A1_at	CF064250	mitosis protein dim1	-	3e-82	At5g08290	YLS8	C.G.	S.X.	Please select
0.03	6e-1	34	ZmAffx.968.1.S1_at	AI833843	-	-	2e+0	At5g67110	ALC (ALCATRAZ)	C.G.	S.X.	Please select
0.04	6e-1	34	Zm.2882.1.A1_at	BM381838	hypothetical protein LOC100191740	-	3e-10	At5g06090	GPAT7 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 7)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.10770.1.A1_at	CK986204	hypothetical protein LOC100277316	-	6e+0	At2g22230	beta-hydroxyacyl-ACP dehydratase, putative	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.1329.1.S1_s_at	40794996-37	-	-	9e+0	At4g12990	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6459.1.S1_at	CF647279	hypothetical protein LOC100274304	-	2e-1	At4g11430	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At3g44590	823584	60S acidic ribosomal protein P2 (RPP2D)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-12	73	Glycine max	Gma.4083.1.S1_at	CA851035	-	-	3e+0	At2g21250	mannose 6-phosphate reductase (NADPH-dependent), putative	C.G.	S.X.	Please select
0.03	4e-2	38	Hordeum vulgare	Contig67_at	Contig67	-	-	4e-40	At2g37600	60S ribosomal protein L36 (RPL36A)	C.G.	S.X.	Please select
0.31	8e-47	188	Oryza sativa	Os11g0112300	AK120830.1	-	GCN5-like protein 1 (RT14 protein homolog)	3e-8	At2g30330	GCN5L1 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.213728.1.S1_at	pmrna26793	hypothetical protein	-	8e-4	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	1e-68	260	Triticum aestivum	TaAffx.11930.3.S1_x_at	CA606100	-	-	1e+0	At5g43640	40S ribosomal protein S15 (RPS15E)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1614541_at	CF210162	MLO10 protein	-	4e-3	At4g30480	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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