Gene omics information

Query gene ID	Zm.8357.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.71	88.2	Zm.16508.1.S1_x_at	BE510313	ribosomal protein L39	-	4e-13	At4g31985	60S ribosomal protein L39 (RPL39C)	S.X.	H.G.	Please select
0.67	85.8	Zm.9526.1.A1_at	AY110244.1	long-chain-fatty-acid-CoA ligase-like protein	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	S.X.	H.G.	Please select
0.67	85.8	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	S.X.	H.G.	Please select
0.67	85.8	Zm.11653.1.A1_at	CF243979	hypothetical protein LOC100191865	-	6e+0	At3g07460	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.14983.2.A1_at	AY109416.1	-	-	3e-5	At5g27150	NHX1 (NA+/H+ EXCHANGER)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.7	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.6	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.2	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	8e-22	103	Zm.6671.3.S1_at	CO519752	hypothetical protein LOC100273935	-	2e-3	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	C.G.	S.X.	Please select
0.08	7e-10	63	Zm.11238.1.A1_at	BM340814	-	-	5e-3	At5g39100	GLP6 (GERMIN-LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.14	2e-7	56	Zm.842.1.A1_at	BM337077	hypothetical protein LOC100273345	-	8e-3	At5g38910	germin-like protein, putative	C.G.	S.X.	Please select
0.03	4e-5	48	Zm.17524.1.S1_at	CO518613	hypothetical protein LOC100193487	-	2e-1	At3g49480	-	C.G.	S.X.	Please select
0.07	3e-3	42	Zm.6671.1.S1_a_at	BM379927	germin-like protein 1	-	7e+0	At3g23167	LCR39 (Low-molecular-weight cysteine-rich 39)	C.G.	S.X.	Please select
0.05	3e-3	42	Zm.503.1.A1_at	CK827179	germin-like protein 2	-	1e-1	At1g77750	30S ribosomal protein S13, chloroplast, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.3122.1.A1_at	CB381414	microtubule motor	-	6e-7	At1g23220	dynein light chain type 1 family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.3122.1.S1_at	CB381414	-	-	6e-7	At1g23220	dynein light chain type 1 family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.13975.1.A1_at	CK985455	carbonyl reductase 3	-	6e-1	At4g20880	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-4	48	Arabidopsis thaliana	At3g62020	825375	GLP10 (GERMIN-LIKE PROTEIN 10)	germin-like protein (GLP10)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	8e-3	42	Glycine max	Gma.2470.1.S1_s_at	AI442629	-	-	9e-17	At1g09560	GLP5 (GERMIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.08	1e-2	40	Hordeum vulgare	Contig17901_at	Contig17901	-	-	6e+0	At4g10300	-	C.G.	S.X.	Please select
0.17	2e-13	77	Oryza sativa	Os01g0952100	9629.m07152	-	Nectarin 1 precursor (EC 1.15.1.1) (Superoxidedismutase [Mn])	3e-1	At3g44140	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.218070.1.S1_at	pmrna33591	hypothetical protein	-	5e-1	At3g12870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	4e-13	75	Triticum aestivum	Ta.7885.1.S1_at	BQ160853	-	-	3e-5	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1612551_at	CF605967	hypothetical protein LOC100251825	-	4e+0	At3g19650	cyclin-related	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage