Gene omics information

Query gene ID	Zm.832.1.A1_at
Gene name	hypothetical protein LOC100275137
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.832.1.A1_at	AY107728.1	hypothetical protein LOC100275137	-	1e+0	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	S.X.	H.G.	Please select
0.50	65.7	Zm.7908.1.A1_at	BM080382	-	-	1e+0	At3g10020	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.8314.1.A1_at	BM953578	hypothetical protein LOC100277461	-	6e+0	At2g38640	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.9102.1.A1_at	BM333481	-	-	2e-2	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	S.X.	H.G.	Please select
0.31	31.6	Zm.16860.1.A1_at	CF648633	-	-	4e-4	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	S.X.	H.G.	Please select
0.20	14.2	Zm.10431.1.S1_at	BQ485377	-	-	1e+1	At5g01300	phosphatidylethanolamine-binding family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.3	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1055	Zm.832.1.S1_at	AY107728.1	-	-	1e+0	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.3913.1.A1_at	CF000034	hypothetical protein LOC100279777	-	3e-6	At3g07750	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.16505.3.A1_at	CF019822	-	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.9130.1.A1_at	BM268570	-	-	7e-2	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.16505.1.A2_at	CF633865	-	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.16525.1.A1_at	CF627777	-	-	7e-129	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.16505.1.A1_at	BG841073	hypothetical protein LOC100272368	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.7791.1.A1_at	BM382756	hypothetical protein LOC100191966	-	3e-8	At4g15960	catalytic/ epoxide hydrolase	C.G.	S.X.	Please select
0.01	4e-1	34	Zm.481.1.S1_at	AF227632.1	mismatch binding protein Mus3	-	2e-8	At4g02070	MSH6 (MUTS HOMOLOG 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At1g54140	841854	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	putative TATA binding protein associated factor 21kDa	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	PsAffx.C282000003_at	PsAffx.C282000003	-	-	2e-2	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	C.G.	S.X.	Please select
0.20	6e-10	63	Hordeum vulgare	Contig4807_at	Contig4807	-	-	8e-11	At5g04750	F1F0-ATPase inhibitor protein, putative	C.G.	S.X.	Please select
0.17	4e-11	69	Oryza sativa	OsAffx.17513.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	34	Populus trichocarpa	PtpAffx.214039.1.S1_at	pmrna27339	hypothetical protein	-	6e-25	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	1e-49	196	Triticum aestivum	Ta.15562.1.S1_at	CA485488	-	-	2e-2	At5g04750	F1F0-ATPase inhibitor protein, putative	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1615995_at	CF212592	hypothetical protein LOC100263324	-	2e-10	At4g30270	MERI5B (meristem-5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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