Gene omics information

Query gene ID	Zm.8287.1.A1_at
Gene name	hypothetical protein LOC100192745
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.8287.1.A1_at	AI737226	hypothetical protein LOC100192745	-	5e+0	At5g65740	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.85	95.9	Zm.13593.1.S1_at	AY107755.1	-	-	1e-8	At5g60620	phospholipid/glycerol acyltransferase family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.19352.1.S1_at	CO532449	-	-	2e-16	At5g49990	xanthine/uracil permease family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.6321.1.A1_at	AI691388	-	-	2e-1	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	S.X.	H.G.	Please select
0.59	76.1	Zm.3808.1.S1_at	CF010880	low-molecular-weight cysteine-rich protein LCR68	-	5e+0	At4g02850	phenazine biosynthesis PhzC/PhzF family protein	S.X.	H.G.	Please select
0.53	69.1	Zm.5922.1.A1_at	CN844887	DNA-binding protein S1FA2	-	2e+0	At1g16250	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.52	67.3	Zm.810.1.S1_at	CF006379	-	-	6e-69	At5g45550	mob1/phocein family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2617.1.A1_at	AI964629	-	-	9e+0	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.15682.1.S1_at	AY107736.1	holocarboxylase synthetase	-	8e+0	At5g42290	transcription activator-related	S.X.	H.G.	Please select
0.38	44.2	Zm.13811.1.A1_at	AY104705.1	-	-	2e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	36	Zm.41.1.S1_at	AI600908	calcium dependent protein kinase1	-	1e-16	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.18419.1.A1_at	CF631047	hypothetical protein LOC100272407	-	2e-10	At5g09680	cytochrome b5 domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.803.1.A1_at	CF625813	hypothetical protein LOC100274731	-	6e-1	At5g25210	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.3339.1.A1_at	BM379687	hypothetical protein LOC100191792	-	2e+0	At2g29880	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.683.1.S1_at	CF972456	barley mlo defense gene homolog5	-	9e-8	At2g33670	MLO5 (MILDEW RESISTANCE LOCUS O 5)	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.6753.1.A1_at	BQ778837	hypothetical protein LOC100277325	-	6e-1	At2g20940	unknown protein	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.5388.1.S1_at	AW453245	hypothetical protein LOC100193632	-	6e-23	At3g09180	unknown protein	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.5008.1.A1_at	AY108557.1	hypothetical protein LOC100275589	-	2e-29	At5g54870	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.4262.1.S1_at	CF625817	hypothetical protein LOC100279864	-	1e+0	At1g65330	PHE1 (PHERES1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At5g65740	836703	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	GmaAffx.66322.1.S1_at	AW185631	-	-	7e-7	At4g02500	XT2 (UDP-XYLOSYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	HVSMEk0009B02r2_at	HVSMEk0009B02r2	-	-	6e-2	At1g72420	-	C.G.	S.X.	Please select
0.11	1e-29	131	Oryza sativa	Os03g0726900	AK072553.1	-	Conserved hypothetical protein	1e-5	At5g65740	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	5e-10	65	Populus trichocarpa	PtpAffx.133654.1.A1_at	CV228844	hypothetical protein	-	1e-5	At5g65740	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.132274.1.A1_at	CK211207	-	-	5e+0	At5g04890	RTM2 (RESTRICTED TEV MOVEMENT 2)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1622452_at	CB982621	-	-	2e+0	At4g25560	AtMYB18 (myb domain protein 18)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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