Gene omics information

Query gene ID	Zm.828.1.A1_at
Gene name	hypothetical protein LOC100277560
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	Zm.828.1.A1_at	AI734461	hypothetical protein LOC100277560	-	5e+0	At3g21371	unknown protein	S.X.	H.G.	Please select
0.85	95.9	Zm.3484.1.A1_at	AW438127	hypothetical protein LOC100273241	-	2e+0	At1g67700	unknown protein	S.X.	H.G.	Please select
0.83	95.6	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	S.X.	H.G.	Please select
0.83	95.6	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	S.X.	H.G.	Please select
0.81	94.3	Zm.5917.1.A1_a_at	BM337345	hypothetical protein LOC100192679	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	S.X.	H.G.	Please select
0.75	90.8	Zm.5220.1.S1_at	AI614989	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	S.X.	H.G.	Please select
0.71	88.2	Zm.10315.1.S1_at	AF461732.1	uncoupling protein	-	6e-5	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	S.X.	H.G.	Please select
0.69	86.5	Zm.4462.1.A1_at	AI714968	-	-	1e+1	At4g00342	unknown protein	S.X.	H.G.	Please select
0.69	86.5	Zm.4667.1.A1_at	BG266366	hypothetical protein LOC100274574	-	4e-1	At1g32780	alcohol dehydrogenase, putative	S.X.	H.G.	Please select
0.65	82.1	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.2	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.4	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	32	ZmAffx.1429.1.S1_at	11990232-14	-	-	0	Atcg00170	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.5759.1.A1_at	BM075398	-	-	5e+0	At5g23405	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5535.1.S1_at	AY108314.1	Protein kinase-like	-	1e-52	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.411.1.A1_at	U90944.1	nucleoredoxin1	-	3e-1	At1g60420	DC1 domain-containing protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zm.9835.2.A1_a_at	CF631519	-	-	4e+0	At5g10650	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.8929.1.A1_a_at	AW352606	hypothetical protein LOC100277218	-	5e+0	At4g02489	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.8587.1.A1_at	BE997225	-	-	4e-1	At1g68845	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zm.6755.2.A1_at	AI667774	-	-	2e-1	At4g39360	unknown protein	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.5647.1.S1_at	AY122272.1	SET domain-containing protein SET104	-	2e+0	At1g02380	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At3g21371	6240550	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.61472.1.A1_at	CD408625	-	-	1e+1	At5g28620	protein kinase C-related	C.G.	S.X.	Please select
0.03	9e+0	30	Hordeum vulgare	HVSMEa0001A19r2_x_at	HVSMEa0001A19r2	-	-	1e+1	At4g24340	phosphorylase family protein	C.G.	S.X.	Please select
0.04	9e+0	32	Oryza sativa	Os09g0107820	NM_183945.1	-	-	6e+0	At5g65890	ACR1 (ACT Domain Repeat 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.136075.1.A1_at	CK090184	-	-	5e+0	At3g05550	hypoxia-responsive family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-1	36	Triticum aestivum	Ta.12960.1.S1_at	CA486003	-	-	7e-1	At3g17640	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1621750_at	CB971067	-	-	2e-1	At5g59050	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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