Gene omics information

Query gene ID	Zm.824.1.A1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	96.4	Zm.824.1.A1_a_at	CF625698	-	-	4e-2	At4g14000	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.9822.1.A1_at	BM348325	-	-	4e+0	At2g44700	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.140.1.A1_at	AI667779	-	-	8e-1	At2g26170	CYP711A1	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.1363.1.S1_at	11990232-91	-	-	0	Atcg01110	-	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1468.1.S1_at	11990232-35	-	-	3e-34	Atcg00550	-	S.X.	H.G.	Please select
0.50	65.7	Zm.8793.1.A1_at	CD436545	-	-	3e+0	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.1336.1.S1_at	11990232-84	-	-	2e-46	Atcg01040	-	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.140.1.S1_at	AI667779	-	-	8e-1	At2g26170	CYP711A1	S.X.	H.G.	Please select
0.42	51.3	Zm.11630.1.A1_at	BM379429	-	-	4e+0	At4g13570	HTA4	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.146.1.S1_at	AI667826	-	-	2e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.6	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-8	59	Zm.995.1.A1_at	CF040767	-	-	2e+0	At5g26080	proline-rich family protein	C.G.	S.X.	Please select
0.03	2e-8	59	Zm.976.1.S1_at	AY107864.1	hypothetical protein LOC100193876	-	8e+0	At5g63530	ATFP3	C.G.	S.X.	Please select
0.03	2e-8	59	Zm.978.1.A1_at	CF627012	-	-	1e-1	At3g16800	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.02	2e-8	59	Zm.772.1.S1_at	BM351247	-	-	2e-6	At1g32080	membrane protein, putative	C.G.	S.X.	Please select
0.02	2e-8	59	Zm.750.1.A1_at	CD999376	hypothetical protein LOC100191573 /// hypothetical protein LOC100276148	-	4e-2	At3g47920	unknown protein	C.G.	S.X.	Please select
0.02	2e-8	59	Zm.7297.1.S1_at	T18738	-	-	2e-48	At5g50920	CLPC1	C.G.	S.X.	Please select
0.03	2e-8	59	Zm.650.1.S1_at	AY029556.1	hypothetical protein AY108545 /// methyl-binding domain protein MBD101	-	2e+0	At3g05920	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	2e-8	59	Zm.6255.1.A1_at	AI600697	-	-	7e-23	At4g03080	kelch repeat-containing serine/threonine phosphoesterase family protein	C.G.	S.X.	Please select
0.02	2e-8	59	Zm.6138.1.A1_at	CF062392	-	-	1e-1	At5g04910	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-2	40	Arabidopsis thaliana	At4g14000	827036	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-6	56	Glycine max	GmaAffx.50307.1.S1_s_at	BI424576	-	-	4e-1	At3g46270	receptor protein kinase-related	C.G.	S.X.	Please select
0.48	3e-112	404	Hordeum vulgare	Contig16617_at	Contig16617	-	-	3e-3	At4g14000	unknown protein	C.G.	S.X.	Please select
0.45	7e-58	226	Oryza sativa	Os09g0359900	AK105521.1	-	Conserved hypothetical protein	7e-1	At4g14000	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	6e-5	50	Populus trichocarpa	PtpAffx.96071.1.S1_at	CV227776	hypothetical protein	-	8e-13	At4g14000	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	1e-51	204	Triticum aestivum	Ta.28009.1.S1_at	BQ161472	-	-	3e+0	At4g14000	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1619456_at	CF404419	hypothetical protein LOC100251413	-	8e-12	At3g14310	ATPME3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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