Gene omics information

Query gene ID	Zm.8204.1.A1_at
Gene name	hypothetical protein LOC100193193
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.8204.1.A1_at	BM073273	hypothetical protein LOC100193193	-	5e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	S.X.	H.G.	Please select
0.50	65.7	Zm.3079.1.A1_at	AW091508	-	-	5e-1	At1g37007	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.18984.1.A1_at	CO518220	hypothetical protein LOC100279220	-	2e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.23	18.6	Zm.18470.1.A1_at	CO520498	hypothetical protein LOC100279437	-	7e+0	At5g26848	unknown protein	S.X.	H.G.	Please select
0.17	10.6	Zm.15439.1.A1_at	CD219438	-	-	3e-3	At2g31820	ankyrin repeat family protein	S.X.	H.G.	Please select
0.15	8.6	Zm.10896.1.A1_at	AY106661.1	-	-	2e-1	At2g23920	unknown protein	S.X.	H.G.	Please select
0.14	7.7	Zm.11831.1.S1_a_at	CA401860	glucan endo-1,3-beta-glucosidase 6	-	7e-5	At5g58090	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.1	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.0	94.0	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-61	236	Zm.16854.1.S1_at	CF674957	hypothetical protein LOC100273231	-	1e-1	At3g18220	phosphatidic acid phosphatase family protein / PAP2 family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.15852.1.S1_at	AI619099	hypothetical protein LOC100193543	-	9e-47	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.265.1.A1_at	U38791.1	hypothetical protein LOC100279974	-	5e+0	At5g62040	brother of FT and TFL1 protein (BFT)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6763.4.S1_at	BG841872	hypothetical protein LOC100279574	-	8e-6	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6763.4.S1_a_at	BG841872	hypothetical protein LOC100279574 /// ribulose bisphosphate carboxylase small subunit1	-	8e-6	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4738.1.A1_at	CF013255	-	-	2e-23	At1g14610	TWN2 (TWIN 2)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4738.2.A1_at	CA403761	-	-	3e+0	Atcg00130	-	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4738.2.S1_at	AY112223.1	-	-	3e+0	Atcg00130	-	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4738.1.A1_a_at	CF013255	-	-	2e-23	At1g14610	TWN2 (TWIN 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	5e-5	50	Arabidopsis thaliana	At3g02600	821299	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	Encodes phosphatidic acid phosphatase. Expressed during germination.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-7	57	Glycine max	GmaAffx.30344.1.S1_at	AW349341	-	-	5e-6	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	C.G.	S.X.	Please select
0.36	2e-42	173	Hordeum vulgare	Contig8594_at	Contig8594	-	-	2e-17	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please select
0.49	0	708	Oryza sativa	Os08g0359200	AK073298.1	-	Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase)	6e-11	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	8e-14	79	Populus trichocarpa	PtpAffx.208919.1.S1_at	pmrna17686	hypothetical protein	-	8e-3	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	3e-43	176	Triticum aestivum	Ta.3559.1.S1_at	BE213357	-	-	3e-9	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please select
0.03	6e-5	48	Vitis vinifera	1615156_at	CF371936	hypothetical protein LOC100259291	-	1e+0	At1g15080	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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