Gene omics information

Query gene ID	Zm.8183.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	94.6	Zm.8183.1.A1_at	BM073193	-	-	1e+0	At4g17980	anac071 (Arabidopsis NAC domain containing protein 71)	S.X.	H.G.	Please select
0.50	65.7	Zm.5904.1.A1_at	AW091094	hypothetical protein LOC100278561	-	2e-5	At2g21600	ATRER1B	S.X.	H.G.	Please select
0.43	52.8	Zm.2387.2.S1_a_at	BG841496	hypothetical protein LOC100274730	-	5e+0	At5g07670	F-box family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.9169.2.S1_x_at	CO521754	hypothetical protein LOC100194136	-	9e-10	At2g47970	NPL4 family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.6743.3.S1_at	AY104585.1	hypothetical protein LOC100216801	-	2e-10	At3g02420	unknown protein	S.X.	H.G.	Please select
0.31	31.6	Zm.9171.1.A1_at	BM339804	hypothetical protein LOC100278000	-	5e+0	At5g43460	lesion inducing protein-related	S.X.	H.G.	Please select
0.29	28.1	Zm.2368.1.A1_at	AY109497.1	-	-	4e-21	At4g32390	phosphate translocator-related	S.X.	H.G.	Please select
0.29	28.1	Zm.3832.1.S1_at	AY112267.1	actin-depolymerizing factor	-	1e-13	At4g25590	ADF7 (actin depolymerizing factor 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Zm.16754.1.A1_at	AI396218	hypothetical protein LOC100273596	-	3e-1	At3g07680	emp24/gp25L/p24 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8168.1.A1_at	BM073139	hypothetical protein LOC100194184	-	2e-21	At5g13610	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.5358.1.A1_at	CF003205	ras-related protein Rab11D	-	9e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5222.1.A1_a_at	CA404656	hypothetical protein LOC100192843	-	1e-55	At5g46210	CUL4 (CULLIN4)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.17181.1.S1_at	CK145306	-	-	7e-17	At1g64660	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.10457.1.A1_a_at	CK348001	cyclin-like F-box	-	1e-7	At2g32560	F-box family protein	C.G.	S.X.	Please select
0.01	8e+0	30	ZmAffx.1407.1.S1_at	40794996-82	-	-	4e-1	At1g42680	myosin-related	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.82.1.S1_at	X57276.1	colored plant1	-	2e-2	At1g63650	EGL3 (ENHANCER OF GLABRA 3)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.7159.1.A1_at	CF972430	hypothetical protein LOC100276523	-	1e+0	At3g04770	RPSAb (40S ribosomal protein SA B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At4g17980	827523	anac071 (Arabidopsis NAC domain containing protein 71)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	PsAffx.psMA016xL24f_at	PsAffx.psMA016xL24f	-	-	1e+1	At5g37800	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.34	2e-56	218	Hordeum vulgare	Contig14948_at	Contig14948	-	-	1e-4	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please select
0.23	1e-60	234	Oryza sativa	Os12g0595000	AK065252.1	-	EXS, C-terminal domain containing protein	3e-13	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-4	46	Populus trichocarpa	PtpAffx.222228.1.S1_s_at	pmrna39503	predicted small molecule transporter	-	9e-22	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	1e-43	176	Triticum aestivum	Ta.10706.1.S1_x_at	CK153112	-	-	5e-11	At5g35730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1622590_at	CD800779	-	-	2e-1	At5g52130	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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