Gene omics information

Query gene ID	Zm.8179.1.A1_at
Gene name	hypothetical protein LOC100191267
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.8179.1.A1_at	CO534834	hypothetical protein LOC100191267	-	1e-8	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	S.X.	H.G.	Please select
0.50	65.7	Zm.11813.1.A1_at	BM380942	hypothetical protein LOC100192995	-	5e+0	At3g08980	signal peptidase I family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.3066.1.A1_at	M33103.1	hypothetical protein LOC100280011	-	7e-5	At1g20620	CAT3 (CATALASE 3)	S.X.	H.G.	Please select
0.37	42.3	Zm.10060.1.A1_at	CK371531	hypothetical protein LOC100217199	-	9e-18	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.36	41.3	Zm.13206.1.S1_at	CA404397	hypothetical protein LOC100192621	-	3e+0	At5g67490	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.3712.1.S1_at	AW506785	Hypothetical protein LOC100216583	-	6e-2	At1g69430	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	98.6	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.9	97.7	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.9	97.3	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Zm.11646.1.A1_at	CO523950	hypothetical protein LOC100273629	-	5e+0	At4g40011	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8493.1.S1_at	BM074400	hypothetical protein LOC100272804	-	1e-1	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5171.1.S1_at	AY107361.1	transposon protein	-	2e-8	At5g25510	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.1727.1.A1_at	CD448459	hypothetical protein LOC100277120	-	1e-5	At1g10700	ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.1442.1.A1_at	BM080134	peroxisomal fatty acid beta-oxidation multifunctional protein	-	2e-18	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.451.1.A1_at	AI677139	-	-	8e-1	At5g66740	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.451.1.S1_at	AI677139	-	-	8e-1	At5g66740	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5944.1.A1_at	BG874229	pyruvate kinase, cytosolic isozyme	-	2e-97	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.4529.1.A1_a_at	CF624627	lipid binding protein	-	4e-3	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-8	61	Arabidopsis thaliana	At5g38660	833856	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	mutant has Altered acclimation responses;	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.psMA013xF16f_at	PsAffx.psMA013xF16f	-	-	5e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.40	1e-71	270	Hordeum vulgare	Contig3270_s_at	Contig3270	-	-	2e-6	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	C.G.	S.X.	Please select
0.44	1e-160	567	Oryza sativa	Os08g0359000	AK066474.1	-	Conserved hypothetical protein	2e-4	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	2e-11	71	Populus trichocarpa	PtpAffx.215444.1.S1_at	pmrna29641	hypothetical protein	-	2e-30	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	9e-142	504	Triticum aestivum	Ta.2406.1.S1_a_at	BG907004	-	-	7e-7	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	C.G.	S.X.	Please select
0.24	1e-5	50	Vitis vinifera	1620193_at	CA816858	hypothetical protein LOC100242947	-	1e-32	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage