Gene omics information

Query gene ID	Zm.8153.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.8153.1.S1_at	BM073105	-	-	3e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	S.X.	H.G.	Please select
0.60	77.8	Zm.1487.1.S1_at	CA404309	-	-	2e-1	At5g06660	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.5498.1.A1_at	AY106013.1	hypothetical protein LOC100194112	-	1e-41	At5g35530	40S ribosomal protein S3 (RPS3C)	S.X.	H.G.	Please select
0.50	65.7	Zm.2822.1.A1_at	AW042274	endo-1,4-beta-glucanase Cel1	-	3e-1	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	S.X.	H.G.	Please select
0.40	48.5	Zm.475.1.S1_at	AF174486.1	methylenetetrahydrofolate reductase	-	4e-22	At3g59970	MTHFR1 (METHYLENETETRAHYDROFOLATE REDUCTASE 1)	S.X.	H.G.	Please select
0.36	41.3	Zm.17574.1.A1_at	CF628805	hypothetical protein LOC100216965	-	5e-8	At2g02810	UTR1 (UDP-GALACTOSE TRANSPORTER 1)	S.X.	H.G.	Please select
0.11	5.3	Zm.3522.1.S1_at	BG265505	-	-	1e-19	At4g00740	dehydration-responsive protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.2	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	Zm.9654.1.A1_at	BM351433	-	-	3e-1	At2g44420	protein N-terminal asparagine amidohydrolase family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.6763.2.A1_at	BM895680	60S ribosomal protein L21	-	3e-14	At1g09690	60S ribosomal protein L21 (RPL21C)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.5827.1.A1_at	BQ539573	meiosis 5	-	1e-1	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.18291.1.A1_at	BG319798	-	-	1e-1	At2g05510	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.18090.1.A1_at	AY106351.1	-	-	1e-8	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.18090.1.S1_at	CK986006	golgi SNARE 12 protein	-	1e-8	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.15981.1.S1_at	BM896110	-	-	2e-7	At3g55760	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	ZmAffx.1291.1.S1_s_at	40794996-23	-	-	2e-1	At5g39930	CLPS5 (CLP1-SIMILAR PROTEIN 5)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.8877.1.A1_at	BM079605	hypothetical protein LOC100274262	-	2e-1	At5g11640	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At5g61030	836224	GR-RBP3 (glycine-rich RNA-binding protein 3)	encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.C46000022_at	PsAffx.C46000022	-	-	3e-1	At1g31040	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	HVSMEh0088I08r2_s_at	HVSMEh0088I08r2	-	-	4e+0	At5g10320	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	36	Oryza sativa	OsAffx.26805.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e+0	32	Populus trichocarpa	PtpAffx.84181.1.A1_at	CK096182	-	-	3e-1	At1g10140	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	2e-110	398	Triticum aestivum	TaAffx.85729.1.S1_at	CA620166	-	-	2e-1	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1620916_at	CD714269	hypothetical protein LOC100256469	-	1e+0	At3g06270	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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