CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.8110.1.A1_at

Gene name hypothetical protein LOC100278802

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.8110.1.A1_at CF623866 hypothetical protein LOC100278802 - 3e-25 At5g49820 emb1879 (embryo defective 1879) S.X. H.G.
0.83 95.6 ZmAffx.225.1.S1_at AI670237 - - 1e+1 At5g09470 mitochondrial substrate carrier family protein S.X. H.G.
0.77 92.1 Zm.5989.1.A1_at AI666066 - - 3e-1 At4g24960 ATHVA22D S.X. H.G.
0.67 85.8 Zm.6306.2.A1_at AI691326 Protein kinase catalytic domain - 1e-10 At1g35670 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) S.X. H.G.
0.53 69.1 Zm.19299.1.A1_at BM074654 - - 4e-3 At4g09270 unknown protein S.X. H.G.
0.50 65.7 Zm.13523.1.A1_at AY108425.1 - - 6e-1 At5g59470 PQ-loop repeat family protein / transmembrane family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.4 98.5 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
10.2 98.4 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
8.8 98.1 GSM253268 ZM_4.5d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
4.9 96.7 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.0 95.8 GSM202409 Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep6 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
3.9 95.7 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9 95.7 GSM202405 Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep5 GSE8188 Expression profiling of zmet2-m1 mutants relative to wild-type
3.9 95.7 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 2e-67 256 Zm.18010.1.A1_at CA400888 - - 2e+0 At1g22840 CYTC-1 (CYTOCHROME C-1) C.G. S.X.
0.20 4e-35 149 ZmAffx.38.1.A1_at AI657470 - - 2e+0 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
0.20 4e-35 149 ZmAffx.38.1.S1_at AI657470 - - 2e+0 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
0.01 4e-1 36 Zm.3507.1.A1_at CK347589 - - 1e-18 At4g11030 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative C.G. S.X.
0.01 4e-1 36 Zm.10446.1.A1_at BQ485330 - - 8e-14 At4g14950 unknown protein C.G. S.X.
0.01 2e+0 34 Zm.9164.1.A1_at BM347915 glycylpeptide N-tetradecanoyltransferase 1 - 5e-4 At5g57020 NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE) C.G. S.X.
0.01 2e+0 34 Zm.3157.3.A1_at CK347593 elongation factor 1-alpha - 0 At1g07930 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.01 2e+0 34 Zm.19070.1.A1_at CD444468 glycylpeptide N-tetradecanoyltransferase 1 - 3e-2 At5g57020 NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE) C.G. S.X.
0.01 2e+0 34 Zm.19116.1.A1_at BM378409 - - 2e-7 At4g33520 PAA1 (P-TYPE ATP-ASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-25 117 Arabidopsis thaliana At5g49820 835045 emb1879 (embryo defective 1879) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PMFO - - - C.G. S.X.
0.21 2e-27 125 Glycine max GmaAffx.83788.1.S1_at AW569098 - - 4e-66 At5g49820 emb1879 (embryo defective 1879) C.G. S.X.
0.51 5e-161 567 Hordeum vulgare Contig6102_at Contig6102 - - 1e-15 At5g49820 emb1879 (embryo defective 1879) C.G. S.X.
0.59 0 767 Oryza sativa Os05g0419200 AK071273.1 - Protein of unknown function DUF647 family protein 3e-25 At5g49820 emb1879 (embryo defective 1879) C.G. S.X.
0.10 6e-12 73 Populus trichocarpa PtpAffx.150916.1.S1_at BU820307 - - 2e-11 At5g49820 emb1879 (embryo defective 1879) C.G. S.X.
0.49 1e-163 577 Triticum aestivum Ta.12751.1.S1_at CK208020 - - 3e-10 At5g49820 emb1879 (embryo defective 1879) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1615493_at CF201435.1 hypothetical protein LOC100265749 - 3e-4 At4g01940 NFU1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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