CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.8049.1.S1_at

Gene name hypothetical protein LOC100272989

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.8049.1.S1_at CF009485 hypothetical protein LOC100272989 - 3e-3 At4g05330 AGD13 (ARF-GAP domain 13) S.X. H.G.
0.52 67.3 Zm.10472.1.A1_at AY112022.1 Hypothetical protein LOC100216888 - 3e-12 At1g80780 CCR4-NOT transcription complex protein, putative S.X. H.G.
0.46 58.4 Zm.18531.1.A1_at BE575145 hypothetical protein LOC100192889 - 2e+0 At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) S.X. H.G.
0.40 48.5 Zm.4193.1.A1_at AY106195.1 DANA2 - 7e+0 At5g19810 proline-rich extensin-like family protein S.X. H.G.
0.30 29.8 Zm.4133.1.A1_at AI855085 - - 3e+0 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative S.X. H.G.
0.25 21.3 Zm.1723.1.A1_at BG841588 - - 8e+0 At2g42130 unknown protein S.X. H.G.
0.24 19.8 Zm.11637.1.A1_at BM379485 - - 5e-7 At5g47910 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 98.2 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.7 97.9 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.3 97.8 GSM206289 Upper pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.2 97.8 GSM206288 Upper pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.5 97.5 GSM206290 Upper pulvinus 15 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.2 97.4 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.2 97.4 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.8 97.2 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0 96.7 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.0 96.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 987 Zm.16797.1.A1_at AW330961 hypothetical protein LOC100273517 - 3e-2 At4g05330 AGD13 (ARF-GAP domain 13) C.G. S.X.
0.08 2e-11 69 Zm.3108.1.S1_at CD219131 - - 8e-13 At4g05330 AGD13 (ARF-GAP domain 13) C.G. S.X.
0.01 9e-2 38 Zm.3028.1.S1_at AI670583 - - 5e-8 At1g21170 SEC5B C.G. S.X.
0.01 1e+0 34 Zm.17116.1.S1_at CF972436 - - 3e-1 At5g10780 - C.G. S.X.
0.01 1e+0 34 Zm.15087.1.S1_at BM350056 - - 7e-14 At3g06810 IBR3 (IBA-RESPONSE 3) C.G. S.X.
0.01 1e+0 34 Zm.14469.1.A1_at AY104124.1 anthranilate synthase alpha - 6e-18 At2g29690 ASA2 (ANTHRANILATE SYNTHASE 2) C.G. S.X.
0.01 5e+0 32 Zm.9947.1.A1_at BM349454 hypothetical protein LOC100278924 - 9e-2 At3g02160 DNA binding C.G. S.X.
0.01 5e+0 32 Zm.9586.1.A1_at BM333269 hypothetical protein LOC100276026 - 7e-1 At2g42130 unknown protein C.G. S.X.
0.01 5e+0 32 Zm.7106.1.A1_at CK985533 hypothetical protein LOC100278648 - 7e+0 At3g10060 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-3 44 Arabidopsis thaliana At4g05330 825881 AGD13 (ARF-GAP domain 13) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. - - - C.G. S.X.
0.06 7e-2 40 Glycine max Gma.1315.2.S1_at BM524843 - - 6e-46 At4g21160 ZAC C.G. S.X.
0.56 0 692 Hordeum vulgare Contig8150_at Contig8150 - - 5e-2 At4g21160 ZAC C.G. S.X.
0.57 0 922 Oryza sativa Os02g0722500 AK066163.1 - Arf GTPase activating protein family protein 2e-7 At4g05330 AGD13 (ARF-GAP domain 13) C.G. S.X.
0.14 3e-10 67 Populus trichocarpa PtpAffx.157550.1.S1_at BU828904 hypothetical protein - 5e-55 At4g21160 ZAC C.G. S.X.
0.31 2e-66 254 Triticum aestivum Ta.358.3.A1_a_at CD492252 - - 9e-2 At4g21160 ZAC C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1618109_at CB971579 - - 2e-11 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage