CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.7976.1.S1_at

Gene name hypothetical protein LOC100217261

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 90.3 Zm.7976.1.S1_at BM080696 hypothetical protein LOC100217261 - 2e-46 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) S.X. H.G.
0.50 65.7 Zm.8301.1.A1_at BM379812 hypothetical protein LOC100278224 - 1e+0 At4g21780 unknown protein S.X. H.G.
0.43 52.8 Zm.16049.2.A1_at CF042888 - - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) S.X. H.G.
0.43 52.8 Zm.3418.1.A1_at CF624427 - - 2e+0 At4g33465 SCRL22 (SCR-Like 22) S.X. H.G.
0.40 48.5 Zm.8945.1.S1_at AY103889.1 - - 2e-85 At5g18580 FASS (FASS 1) S.X. H.G.
0.40 48.5 Zm.13409.1.A1_at AF457934.1 - - 6e-2 At1g62640 KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III) S.X. H.G.
0.38 44.2 Zm.8551.1.A1_at BM333970 - - 2e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) S.X. H.G.
0.29 28.1 Zm.5960.1.A1_at AI665953 hypothetical protein LOC100277799 - 1e+1 At5g65158 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.7 96.5 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.5 96.3 GSM162264 Mutant 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.7 95.4 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206292 Upper pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.81 0 987 Zm.4906.1.S1_at AW146712 Hypothetical protein LOC100193835 - 2e-34 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.02 1e-2 40 Zm.14791.1.A1_at CF628382 ADP-ribosylation factor-like protein 8B - 7e-9 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
0.01 7e-1 34 Zm.3845.1.A1_at AI711969 hypothetical protein LOC100274222 - 2e-7 At5g38470 DNA repair protein RAD23, putative C.G. S.X.
0.01 7e-1 34 Zm.16769.1.A1_at CF634379 Hypothetical protein LOC100191855 - 5e-5 At1g04510 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 7e-1 34 Zm.15669.1.S1_at CA403955 plant-specific domain TIGR01570 family protein - 1e-4 At3g25640 unknown protein C.G. S.X.
0.01 7e-1 34 Zm.1072.1.S1_at CF636672 Glycine cleavage complex P-protein - 6e-98 At4g33010 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) C.G. S.X.
0.02 3e+0 32 Zm.9048.2.A1_at BG321152 nudix hydrolase 4 - 5e-1 At1g13420 ST4B (SULFOTRANSFERASE 4B) C.G. S.X.
0.02 3e+0 32 Zm.6180.1.S1_at CF031407 hypothetical protein LOC100277615 - 1e-5 At4g10430 - C.G. S.X.
0.02 3e+0 32 Zm.15474.2.A1_x_at CK827856 flower-specific gamma-thionin - 1e+0 At2g41225 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.57 2e-46 186 Arabidopsis thaliana At5g37680 833747 ATARLA1A (ADP-ribosylation factor-like A1A) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARL GTPases. - - - C.G. S.X.
0.25 5e-23 109 Glycine max Gma.12506.1.S1_at CD404127 - - 7e-62 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) C.G. S.X.
0.51 7e-137 486 Hordeum vulgare Contig9022_at Contig9022 - - 2e-55 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.54 5e-169 595 Oryza sativa Os02g0732500 AK111722.1 - ADP-ribosylation factor-like protein 2e-58 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.37 7e-50 198 Populus trichocarpa Ptp.4752.1.S1_at CV275199 hypothetical protein - 5e-60 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.49 6e-130 464 Triticum aestivum Ta.3262.1.S1_at BQ806543 k12B20.15 protein - 2e-31 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.19 2e-22 105 Vitis vinifera 1619019_at CF213490 hypothetical protein LOC100243336 - 2e-102 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage