Gene omics information

Query gene ID	Zm.7964.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.7964.1.A1_at	AY106297.1	-	-	5e-1	At5g48375	TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3)	S.X.	H.G.	Please select
0.71	88.2	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select
0.63	81.1	Zm.9888.2.A1_a_at	BM334632	-	-	5e+0	At4g16510	YbaK/prolyl-tRNA synthetase-related	S.X.	H.G.	Please select
0.50	65.7	Zm.4775.1.A1_at	CK826898	-	-	1e-1	At2g36695	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.6423.2.A1_at	AI691968	hypothetical protein LOC100273356	-	1e+0	At3g23180	-	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.957.1.S1_at	AI833524	-	-	3e+0	At2g40995	-	S.X.	H.G.	Please select
0.44	55.7	Zm.19335.1.A1_at	CO521700	hypothetical protein LOC100279445	-	6e-4	At3g22440	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.4883.1.A1_at	AY107709.1	Hypothetical protein LOC100216906	-	2e-5	At1g07530	SCL14 (SCARECROW-LIKE 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.3	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.7	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM202411	Zmet2 study 11-day seedling aerial tissue genotype Mo17 zmet2-m1 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	1e-107	389	Zm.3633.1.A1_at	U33816.1	beta glucosidase1	-	1e-6	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	C.G.	S.X.	Please select
0.36	4e-86	317	Zm.418.1.A1_at	U44087.1	beta-D-glucosidase precursor	-	1e+0	At1g47600	BGLU34 (BETA GLUCOSIDASE 34)	C.G.	S.X.	Please select
0.21	1e-15	83	Zm.1831.1.S1_at	BG840713	-	-	1e-1	At4g21760	BGLU47 (Beta-glucosidase 47)	C.G.	S.X.	Please select
0.04	4e-6	52	Zm.5375.1.A1_at	AY107376.1	beta-glucosidase	-	2e-6	At3g18080	BGLU44 (B-S GLUCOSIDASE 44)	C.G.	S.X.	Please select
0.03	2e-4	46	Zm.10043.1.A1_at	BM378321	-	-	1e-1	At3g18080	BGLU44 (B-S GLUCOSIDASE 44)	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.3476.1.A1_at	BQ538179	-	-	8e-2	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.6863.2.A1_a_at	CF637783	hypothetical protein LOC100193970	-	7e-67	At1g48410	AGO1 (ARGONAUTE 1)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.6863.2.A1_at	CF637783	hypothetical protein LOC100193970	-	7e-67	At1g48410	AGO1 (ARGONAUTE 1)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.6209.1.S1_at	CO526554	secondary cell wall-related glycosyltransferase family 47	-	1e-58	At5g61840	GUT1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At5g48375	834891	TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3)	Is a myrosinase pseudogene that codes for a truncated and frameshifted protein. Although TGG3 apparently is a pseudogene, its mRNA is expressed specifically in stamen and petal according to RT-PCR analysis. Western analysis shows no band of the size expected for a TGG3 protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	HgAffx.12980.1.S1_at	CB375002	-	-	9e-1	At1g08940	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select
0.06	6e-2	38	Hordeum vulgare	Contig2348_s_at	Contig2348	-	-	2e-1	At5g08150	unknown protein	C.G.	S.X.	Please select
0.03	6e-2	40	Oryza sativa	Os06g0605300	9634.m03865	-	Hypothetical protein	2e-1	At5g63340	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.214583.1.S1_at	pmrna28349	hypothetical protein	-	3e+0	At4g39770	trehalose-6-phosphate phosphatase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	2e-71	270	Triticum aestivum	TaAffx.58753.1.S1_at	CA618016	-	-	1e-1	At3g44540	FAR4 (FATTY ACID REDUCTASE 4)	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1612391_at	CF517423	hypothetical protein LOC100266034	-	2e-1	At4g14815	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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