Gene omics information

Query gene ID	Zm.7953.1.A1_at
Gene name	acid phosphatase/vanadium-dependent haloperoxidase related
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.7953.1.A1_at	BM351733	acid phosphatase/vanadium-dependent haloperoxidase related	-	7e+0	At3g21610	-	S.X.	H.G.	Please select
0.40	48.5	Zm.13829.1.A1_at	AY104407.1	hypothetical protein LOC100193761	-	2e-1	At5g03980	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.8100.3.S1_at	AY110408.1	-	-	4e-1	At4g23090	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.1661.1.A1_at	BM079681	50S ribosomal protein L27	-	5e-1	At1g15840	unknown protein	S.X.	H.G.	Please select
0.10	4.6	Zm.13545.1.S1_at	CF011295	-	-	6e+0	At4g29150	IQD25 (IQ-domain 25)	S.X.	H.G.	Please select
0.03	1.1	Zm.4068.1.S1_at	CO534672	Ferredoxin-NADP reductase precursor	-	9e-16	At1g30510	ATRFNR2 (ROOT FNR 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.8	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	40	Zm.4385.1.S1_at	BQ487047	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4747.1.S1_a_at	AY105845.1	small nuclear ribonucleoprotein-associated protein B	-	3e-9	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	C.G.	S.X.	Please select
0.07	2e-1	36	Zm.2278.1.S1_at	BF727982	acid phosphatase/vanadium-dependent haloperoxidase related	-	7e-3	At1g67600	-	C.G.	S.X.	Please select
0.01	8e-1	34	ZmAffx.1392.1.S1_at	40794996-67	-	-	0	Atmg00513	-	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.6032.1.A1_at	AI668502	hypothetical protein LOC100192630	-	9e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8964.1.A1_at	BM349637	hypothetical protein LOC100275188	-	6e-3	At3g08610	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.875.2.A1_at	AI668449	hypothetical protein LOC100276297	-	1e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.4384.1.A1_at	CF637440	-	-	7e-1	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.17744.1.A1_at	CK986209	hypothetical protein LOC100274435	-	1e+0	At3g57970	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e+0	32	Arabidopsis thaliana	At3g21610	821715	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	34	Glycine max	GmaAffx.62521.1.S1_at	BI971390	-	-	2e-43	At1g24350	-	C.G.	S.X.	Please select
0.40	2e-103	375	Hordeum vulgare	Contig4784_at	Contig4784	-	-	8e-3	At1g67600	-	C.G.	S.X.	Please select
0.40	6e-110	398	Oryza sativa	Os04g0486900	AK109531.1	-	Protein of unknown function DUF212 family protein	1e-1	At1g67600	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-2	42	Populus trichocarpa	PtpAffx.211876.1.S1_at	pmrna23318	hypothetical protein	-	7e-26	At3g21610	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	0	652	Triticum aestivum	Ta.16383.1.S1_at	CA605459	-	-	4e+0	At3g21610	-	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619601_at	CF972321.1	hypothetical protein LOC100248187	-	2e-24	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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