Gene omics information

Query gene ID	Zm.7941.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.7941.1.A1_at	BM080529	-	-	1e+0	At3g50040	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.18369.1.S1_at	BQ618986	hypothetical protein LOC100193825 /// PCO071075 protein	-	9e-1	At3g53000	AtPP2-A15 (Phloem protein 2-A15)	S.X.	H.G.	Please select
0.67	85.8	Zm.15705.1.A1_at	CD440189	-	-	1e-4	At4g38270	GAUT3 (Galacturonosyltransferase 3)	S.X.	H.G.	Please select
0.61	79.5	Zm.13581.1.A1_at	BM379129	-	-	2e-4	At5g65460	kinesin motor protein-related	S.X.	H.G.	Please select
0.50	65.7	Zm.218.1.A1_a_at	AB016802.1	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select
0.44	55.7	Zm.7620.1.A1_at	CF629426	hypothetical protein LOC100279978	-	2e-3	At2g24010	scpl23 (serine carboxypeptidase-like 23)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.8	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.1	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.5	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.5	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	Zm.6268.1.A1_at	BM073308	hypothetical protein LOC100192813	-	2e-3	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3699.3.S1_at	AI649477	hypothetical protein LOC100273816	-	4e-10	At3g13460	ECT2	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17985.1.A1_at	CK827203	-	-	7e-44	At5g63680	pyruvate kinase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.15070.1.A1_at	BG841343	pyruvate kinase, cytosolic isozyme	-	9e-34	At5g63680	pyruvate kinase, putative	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.9792.1.A1_at	BM338998	pleckstrin homology domain-containing protein 1	-	7e-3	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.8702.1.A1_at	AI734669	-	-	5e-19	At1g04140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	7e+0	30	Zm.7152.1.A1_at	AY110483.1	hypothetical protein LOC100216962	-	7e-5	At5g47500	pectinesterase family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.7051.1.S1_at	AI833408	hypothetical protein LOC100277200	-	1e+0	At5g61997	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.6912.1.A1_at	AY108055.1	-	-	4e-1	At5g05430	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At3g50040	824166	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	GmaAffx.88602.1.A1_at	CD400935	-	-	2e+0	At4g27920	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	Contig8823_at	Contig8823	-	-	2e+1	At5g23535	KOW domain-containing protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os.16593.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.5302.1.A1_at	CV253901	-	-	6e-1	At5g46490	disease resistance protein (TIR-NBS class), putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.110534.1.S1_x_at	CA658015	-	-	9e-1	At1g69780	ATHB13	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1616441_at	CB343294	-	-	2e-1	At1g30070	SGS domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage