Gene omics information

Query gene ID	Zm.7937.1.A1_at
Gene name	plant viral-response family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.7937.1.A1_at	BM080506	plant viral-response family protein	-	1e+0	At5g19140	AILP1	S.X.	H.G.	Please select
0.50	65.7	Zm.5665.1.A1_at	CF015743	hypothetical protein LOC100277219	-	7e-2	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.5265.1.A1_at	CD441734	hypothetical protein LOC100191432	-	4e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select
0.40	48.5	Zm.4530.1.A1_at	CK827450	hypothetical protein LOC100276667	-	1e-1	At5g33898	unknown protein	S.X.	H.G.	Please select
0.35	38.9	Zm.7569.1.A1_at	BM347275	-	-	1e+0	At1g69880	ATH8 (thioredoxin H-type 8)	S.X.	H.G.	Please select
0.33	36.0	Zm.12656.1.S1_at	CF010887	-	-	5e+0	At5g07020	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.5	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
39.2	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.8	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-3	40	Zm.584.1.S1_a_at	U57002.1	pericarp color1	-	1e-8	At2g47460	MYB12 (MYB DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.04	3e-2	38	ZmAffx.828.1.S1_at	AI770529	-	-	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.535.1.S1_at	AF318579.1	hypothetical LOC542493	-	7e-2	At2g20570	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.990.1.A1_at	CF636054	-	-	1e+1	At5g44345	F-box family protein-related	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.5140.1.A1_at	CO517926	Hypothetical protein LOC100191406	-	3e+0	At1g55220	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.351.1.S1_at	U89509.2	b-keto acyl reductase	-	5e-5	At1g24470	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.2550.1.S1_at	CF632382	cinnamoyl CoA reductase1	-	2e-1	At1g80820	CCR2 (CINNAMOYL COA REDUCTASE)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.19220.1.S1_at	AW042422	hypothetical protein LOC100191564	-	3e-3	At5g08380	AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g19140	832034	AILP1	F:molecular_function unknown;P:response to aluminum ion, response to auxin stimulus;C:plasma membrane;BPOMFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	PsAffx.C2000283_at	PsAffx.C2000283	-	-	1e+0	At3g27590	unknown protein	C.G.	S.X.	Please select
0.04	6e-1	34	Hordeum vulgare	Contig26571_at	Contig26571	-	-	1e-2	At4g12940	unknown protein	C.G.	S.X.	Please select
0.10	6e-4	46	Oryza sativa	Os09g0444800	AK110839.1	-	Protein of unknown function DUF716 family protein	3e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.214641.1.S1_at	pmrna28441	hypothetical protein	-	1e+0	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-2	40	Triticum aestivum	Ta.13020.1.S1_at	CA486678	-	-	1e+1	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1615277_at	CF201654.1	-	-	4e-31	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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