Gene omics information

Query gene ID Zm.7905.1.S1_at
Gene name hypothetical protein LOC100193292
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.0Zm.7905.1.S1_atBM078113hypothetical protein LOC100193292-6e-15At1g09340CRB (CHLOROPLAST RNA BINDING)S.X.H.G.
0.3336.0ZmAffx.282.1.S1_atAI670410--3e+0At5g09520hydroxyproline-rich glycoprotein family proteinS.X.H.G.
0.158.6ZmAffx.732.1.S1_atAI740043--5e+0At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)S.X.H.G.
0.104.6Zm.8311.2.A1_a_atBM073622--4e+0At4g23090unknown proteinS.X.H.G.
0.072.9ZmAffx.480.1.A1_atAI677621transmembrane 9 superfamily protein member 4-8e-1At1g18871unknown proteinS.X.H.G.
0.062.3ZmAffx.536.1.S1_atAI711796--1e+1At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.098.7GSM320444protocol: mRNA - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.498.1GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.498.1GSM253270ZM_4.5d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
8.398.0GSM253257ZM_2d_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydis
7.997.9GSM320446protocol: mRNA - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.197.7GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.197.7GSM253258ZM_2d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
7.197.7GSM253264ZM_4d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
6.897.6GSM253268ZM_4.5d_Mock_3inf_IGSE10023Maize gene expression during infection with Ustilago maydis
6.897.6GSM253256ZM_2d_Mock_3inf_IGSE10023Maize gene expression during infection with Ustilago maydis
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.025e-134Zm.6930.1.A1_atCK370820hypothetical protein LOC100193485-3e-27At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)C.G.S.X.
0.015e-134Zm.3875.1.S1_atBQ539306--2e-31At1g50200ALATS (ALANYL-TRNA SYNTHETASE)C.G.S.X.
0.022e+032Zm.7791.1.A1_atBM382756hypothetical protein LOC100191966-3e-8At4g15960catalytic/ epoxide hydrolaseC.G.S.X.
0.012e+032Zm.606.1.A2_s_atAF326493.1plasma membrane integral protein ZmPIP2-2 /// plasma membrane intrinsic protein2-1e-37At2g37180RD28 (RESPONSIVE TO DESICCATION 28)C.G.S.X.
0.012e+032Zm.606.1.A1_atAF326493.1plasma membrane intrinsic protein2-1e-37At2g37180RD28 (RESPONSIVE TO DESICCATION 28)C.G.S.X.
0.022e+032Zm.604.1.A1_atAF326490.1plasma membrane integral protein ZmPIP1-6-1e-5At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)C.G.S.X.
0.012e+032Zm.500.1.A1_atAF254072.1Histone deacetylase 2 isoform b-5e-5At5g22650HD2B (HISTONE DEACETYLASE 2B)C.G.S.X.
0.012e+032Zm.4218.1.S1_atAI861340hypothetical protein LOC100275459-8e-1At2g03310unknown proteinC.G.S.X.
0.022e+032Zm.334.1.S1_atAF326489.1plasma membrane intrinsic protein1-5e-11At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.266e-1581Arabidopsis thalianaAt1g09340837455CRB (CHLOROPLAST RNA BINDING)Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.---C.G.S.X.
0.112e-344Glycine maxGma.17726.1.S1_atBE820041--3e-37At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.521e-106385Hordeum vulgareContig1760_s_atContig1760--2e-9At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.377e-118424Oryza sativaOs12g0420200CB652532-38 kDa ribosome-associated protein1e+0At1g31250proline-rich family proteinC.G.S.X.
0.122e-654Populus trichocarpaPtpAffx.66333.1.S1_atBU873607--1e+0At4g05010F-box family proteinC.G.S.X.
0.315e-71268Triticum aestivumTa.1983.1.S1_atCD884181--1e-8At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
0.154e-1373Vitis vinifera1621301_atCB341732hypothetical protein LOC100261308-4e-22At1g09340CRB (CHLOROPLAST RNA BINDING)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage