Gene omics information

Query gene ID	Zm.7905.1.S1_at
Gene name	hypothetical protein LOC100193292
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.7905.1.S1_at	BM078113	hypothetical protein LOC100193292	-	6e-15	At1g09340	CRB (CHLOROPLAST RNA BINDING)	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.282.1.S1_at	AI670410	-	-	3e+0	At5g09520	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.15	8.6	ZmAffx.732.1.S1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.10	4.6	Zm.8311.2.A1_a_at	BM073622	-	-	4e+0	At4g23090	unknown protein	S.X.	H.G.	Please select
0.07	2.9	ZmAffx.480.1.A1_at	AI677621	transmembrane 9 superfamily protein member 4	-	8e-1	At1g18871	unknown protein	S.X.	H.G.	Please select
0.06	2.3	ZmAffx.536.1.S1_at	AI711796	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.0	98.7	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.3	98.0	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.9	97.9	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.1	97.7	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.8	97.6	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.8	97.6	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	Zm.6930.1.A1_at	CK370820	hypothetical protein LOC100193485	-	3e-27	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7791.1.A1_at	BM382756	hypothetical protein LOC100191966	-	3e-8	At4g15960	catalytic/ epoxide hydrolase	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.606.1.A2_s_at	AF326493.1	plasma membrane integral protein ZmPIP2-2 /// plasma membrane intrinsic protein2	-	1e-37	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.606.1.A1_at	AF326493.1	plasma membrane intrinsic protein2	-	1e-37	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.604.1.A1_at	AF326490.1	plasma membrane integral protein ZmPIP1-6	-	1e-5	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.500.1.A1_at	AF254072.1	Histone deacetylase 2 isoform b	-	5e-5	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4218.1.S1_at	AI861340	hypothetical protein LOC100275459	-	8e-1	At2g03310	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.334.1.S1_at	AF326489.1	plasma membrane intrinsic protein1	-	5e-11	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	6e-15	81	Arabidopsis thaliana	At1g09340	837455	CRB (CHLOROPLAST RNA BINDING)	Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-3	44	Glycine max	Gma.17726.1.S1_at	BE820041	-	-	3e-37	At1g09340	CRB (CHLOROPLAST RNA BINDING)	C.G.	S.X.	Please select
0.52	1e-106	385	Hordeum vulgare	Contig1760_s_at	Contig1760	-	-	2e-9	At1g09340	CRB (CHLOROPLAST RNA BINDING)	C.G.	S.X.	Please select
0.37	7e-118	424	Oryza sativa	Os12g0420200	CB652532	-	38 kDa ribosome-associated protein	1e+0	At1g31250	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-6	54	Populus trichocarpa	PtpAffx.66333.1.S1_at	BU873607	-	-	1e+0	At4g05010	F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	5e-71	268	Triticum aestivum	Ta.1983.1.S1_at	CD884181	-	-	1e-8	At1g09340	CRB (CHLOROPLAST RNA BINDING)	C.G.	S.X.	Please select
0.15	4e-13	73	Vitis vinifera	1621301_at	CB341732	hypothetical protein LOC100261308	-	4e-22	At1g09340	CRB (CHLOROPLAST RNA BINDING)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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