Gene omics information

Query gene ID	Zm.7847.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.7847.1.A1_at	BM080149	-	-	1e+0	At3g27416	unknown protein	S.X.	H.G.	Please select
0.64	81.7	Zm.4338.1.A1_at	CF638243	peroxidase 72	-	1e-8	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	S.X.	H.G.	Please select
0.44	55.7	Zm.11661.1.A1_at	BM379776	-	-	1e+0	At3g24570	peroxisomal membrane 22 kDa family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.8040.1.A1_a_at	BM073932	hypothetical protein LOC100274921	-	1e+0	At5g46620	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.4122.1.S1_at	AY107878.1	-	-	2e+0	At5g07490	unknown protein	S.X.	H.G.	Please select
0.39	45.6	Zm.11992.1.A1_at	BM382475	-	-	3e+0	At5g41614	unknown protein	S.X.	H.G.	Please select
0.39	45.6	ZmAffx.601.1.A1_at	AI715029	-	-	8e-1	At1g35430	unknown protein	S.X.	H.G.	Please select
0.37	42.3	Zm.19138.1.S1_at	CO525589	hypothetical protein LOC100277966	-	5e-1	At2g46300	-	S.X.	H.G.	Please select
0.35	38.9	Zm.5985.3.S1_at	CF041948	-	-	4e-28	At4g16340	SPK1 (SPIKE1)	S.X.	H.G.	Please select
0.35	38.9	Zm.18374.1.A1_at	CO521737	hypothetical protein LOC100191144	-	1e-1	At1g21890	nodulin MtN21 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.3	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.7	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	42	Zm.5048.1.A1_a_at	AF015522.1	-	-	2e-96	At5g58420	40S ribosomal protein S4 (RPS4D)	C.G.	S.X.	Please select
0.04	7e-3	40	Zm.19010.1.A1_at	CO526711	hypothetical protein LOC100276214	-	2e-1	At1g13690	ATE1	C.G.	S.X.	Please select
0.03	7e-3	40	Zm.15995.1.A1_a_at	AI666121	peptidyl-prolyl cis-trans isomerase CYP19-4	-	1e-48	At2g29960	CYP5 (CYCLOPHILIN 5)	C.G.	S.X.	Please select
0.03	7e-3	40	Zm.15995.1.A1_at	AI666121	-	-	1e-48	At2g29960	CYP5 (CYCLOPHILIN 5)	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.7659.1.S1_at	AY639019.1	phosphate transport protein	-	5e-12	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.6349.1.A1_at	CA830981	hypothetical protein LOC100277279	-	1e-7	At1g46264	AT-HSFB4	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.3592.1.S1_at	CA401155	-	-	1e+1	At5g57230	-	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.12405.1.A1_at	BM381554	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.1234.2.A1_at	AY105877.1	hypothetical protein LOC100193069	-	1e+1	At5g56840	DNA-binding family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g27416	6240637	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.44555.1.S1_s_at	BE584146	-	-	3e+0	At5g37415	sequence-specific DNA binding / transcription factor	C.G.	S.X.	Please select
0.07	6e-13	73	Hordeum vulgare	Contig21916_at	Contig21916	-	-	4e-1	At2g42760	unknown protein	C.G.	S.X.	Please select
0.07	3e-5	50	Oryza sativa	Os.12421.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e-2	38	Populus trichocarpa	PtpAffx.141078.1.A1_at	CV233027	-	-	1e+0	At3g62410	CP12-2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	3e-10	65	Triticum aestivum	Ta.25187.1.A1_at	CA648378	-	-	5e+0	At5g50930	DNA binding	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1607133_at	CB972306	hypothetical protein LOC100248153	-	2e-4	At1g68320	MYB62 (myb domain protein 62)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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