CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.7830.1.S1_at

Gene name nucleic acid binding protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.1 Zm.7830.1.S1_at BM080060 nucleic acid binding protein - 4e-1 At2g03190 ASK16 (ARABIDOPSIS SKP1-LIKE 16) S.X. H.G.
0.77 92.1 ZmAffx.1316.1.S1_at 40794996-30 - - 6e-1 At1g78172 unknown protein S.X. H.G.
0.73 89.9 ZmAffx.1142.1.A1_at AW399873 - - 2e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative S.X. H.G.
0.67 85.8 Zm.7016.1.A1_at AY103859.1 - - 3e-1 At5g44610 MAP18 (Microtubule-associated Protein 18) S.X. H.G.
0.57 75.1 Zm.17818.1.A1_at CK145213 - - 6e+0 At5g52470 FIB1 (FIBRILLARIN 1) S.X. H.G.
0.15 8.6 Zm.1094.1.A1_at BM339500 - - 2e-5 At5g26210 AL4 (ALFIN-LIKE 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.6 97.6 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.2 96.0 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.4 94.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0 94.0 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.0 94.0 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Zm.6070.1.A1_at BG873673 thioredoxin domain-containing protein 2 - 2e+0 At5g08120 MBP2C (MICROTUBULE BINDING PROTEIN 2C) C.G. S.X.
0.02 7e-1 34 Zm.4433.1.A1_at AY108076.1 - - 4e-2 At3g09850 D111/G-patch domain-containing protein C.G. S.X.
0.02 7e-1 34 Zm.4433.1.S1_at AY108076.1 G-patch domain containing protein - 4e-2 At3g09850 D111/G-patch domain-containing protein C.G. S.X.
0.02 7e-1 34 Zm.13367.1.S1_at Y17332.1 proline-rich protein - 5e-2 At1g12610 DDF1 (DWARF AND DELAYED FLOWERING 1) C.G. S.X.
0.02 7e-1 34 Zm.13367.1.S1_x_at Y17332.1 proline-rich protein - 5e-2 At1g12610 DDF1 (DWARF AND DELAYED FLOWERING 1) C.G. S.X.
0.02 3e+0 32 Zm.8741.1.A1_at BM349488 - - 1e+0 At3g16330 unknown protein C.G. S.X.
0.02 3e+0 32 Zm.479.1.S1_at AF148498.1 small auxin up RNA1 - 2e+0 At5g61412 unknown protein C.G. S.X.
0.01 3e+0 32 Zm.442.1.S1_at AF104924.2 unconventional myosin heavy chain - 5e-48 At5g20490 XIK C.G. S.X.
0.02 3e+0 32 Zm.17990.1.A1_at BG837629 - - 2e+0 At5g54460 wound-responsive protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At2g03190 814848 ASK16 (ARABIDOPSIS SKP1-LIKE 16) one of SKP1 homologs. Gene is expressed specifically in the silique. - - - C.G. S.X.
0.06 1e-1 38 Glycine max Gma.4669.1.A1_at AW309783 - - 5e+0 At5g08535 D111/G-patch domain-containing protein C.G. S.X.
0.32 2e-44 178 Hordeum vulgare Contig16699_at Contig16699 - - 3e-1 At1g33640 unknown protein C.G. S.X.
0.34 1e-21 105 Oryza sativa Os.2534.1.S1_at - - - 0 C.G. S.X.
0.06 2e+0 34 Populus trichocarpa PtpAffx.17258.1.A1_at CV269729 hypothetical protein - 7e-10 At3g52350 D111/G-patch domain-containing protein C.G. S.X.
0.29 4e-38 159 Triticum aestivum Ta.22813.1.S1_at CA596449 - - 8e-2 At1g01640 speckle-type POZ protein-related C.G. S.X.
0.06 2e-3 42 Vitis vinifera 1612235_at CB349151 hypothetical protein LOC100254152 - 3e-1 At2g24830 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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