Gene omics information

Query gene ID	Zm.7780.1.A1_at
Gene name	hypothetical protein LOC100274595
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.7780.1.A1_at	CD433445	hypothetical protein LOC100274595	-	1e-7	At4g19230	CYP707A1	S.X.	H.G.	Please select
0.83	95.6	Zm.10500.1.S1_at	CA827201	-	-	1e+0	At1g07485	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.9244.1.A1_at	BQ538694	hypothetical protein LOC100194342	-	7e-10	At5g08710	regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.5867.2.A1_at	AY104476.1	-	-	1e+1	At4g19645	-	S.X.	H.G.	Please select
0.61	79.5	Zm.5866.1.S1_at	CF044154	AP-1 complex subunit sigma-2	-	5e-38	At2g17380	AP19	S.X.	H.G.	Please select
0.61	79.5	Zm.5119.2.A1_at	CF637544	-	-	2e+0	At5g36140	CYP716A2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.7	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2169	Zm.7780.1.S1_at	CD433445	-	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.17	2e-11	69	Zm.12789.1.A1_at	CA398899	-	-	9e-3	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	C.G.	S.X.	Please select
0.01	4e-3	42	Zm.494.1.A1_a_at	AF236368.1	prohibitin1	-	2e-48	At4g28510	ATPHB1 (PROHIBITIN 1)	C.G.	S.X.	Please select
0.01	4e-3	42	Zm.494.1.A2_at	AF236368.1	prohibitin1	-	2e-48	At4g28510	ATPHB1 (PROHIBITIN 1)	C.G.	S.X.	Please select
0.04	1e-2	40	Zm.390.1.S1_at	U32579.1	dwarf plant3	-	4e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.6654.1.A1_at	CF038689	26S proteasome non-ATPase regulatory subunit 11	-	3e-28	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.11831.2.A1_at	AI677503	-	-	1e+0	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.11831.1.S1_a_at	CA401860	glucan endo-1,3-beta-glucosidase 6	-	7e-5	At5g58090	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10467.1.S1_at	CA826991	hypothetical protein LOC100274742	-	1e+0	At2g27580	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-7	57	Arabidopsis thaliana	At4g19230	827663	CYP707A1	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-8	61	Glycine max	GmaAffx.82642.2.S1_at	AW472495	Abscisic acid 8'-hydroxylase	-	9e-5	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.25	3e-75	282	Hordeum vulgare	Contig11708_at	Contig11708	-	-	1e-1	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.35	3e-84	313	Oryza sativa	Os02g0703600	AK067007.1	-	Cytochrome P450 90C1 (EC 1.14.-.-) (ROTUNDIFOLIA3)	2e-2	At4g19230	CYP707A1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-10	67	Populus trichocarpa	PtpAffx.223327.1.S1_at	pmrna41264	hypothetical protein	-	1e-39	At4g19230	CYP707A1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	1e-140	500	Triticum aestivum	Ta.22981.3.S1_a_at	BJ291883	-	-	1e-6	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1622351_at	CA810859	hypothetical protein LOC100267126	-	1e-69	At5g21274	CAM6 (CALMODULIN 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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