CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.777.1.S1_a_at

Gene name hypothetical protein LOC100272376

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 74.4 Zm.777.1.S1_a_at CD442368 hypothetical protein LOC100272376 - 4e-8 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein S.X. H.G.
0.67 85.8 ZmAffx.774.1.A1_at AI746198 hypothetical protein LOC100279501 - 2e+0 At2g41000 heat shock protein binding S.X. H.G.
0.64 81.7 Zm.2615.1.S1_at CO533179 hypothetical protein LOC100279288 - 5e-5 At3g54180 CDKB1 S.X. H.G.
0.55 71.6 Zm.2763.1.S1_at AW067129 hypothetical protein LOC100191545 - 9e-7 At1g19710 glycosyl transferase family 1 protein S.X. H.G.
0.50 65.7 ZmAffx.1299.1.S1_at 40794996-27 - - 0 Atmg00580 - S.X. H.G.
0.39 45.6 ZmAffx.1489.1.S1_at 11990232-46 - - 0 Atcg00680 - S.X. H.G.
0.36 41.3 Zm.8664.1.A1_at BM338299 hypothetical protein LOC100274639 - 2e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
0.29 28.1 Zm.6275.1.S1_a_at AF540907.1 benzoxazin6 - 7e-1 At1g06640 2-oxoglutarate-dependent dioxygenase, putative S.X. H.G.
0.25 21.3 Zm.14692.1.A1_s_at BQ539260 hypothetical protein LOC100276042 - 5e+0 At1g09195 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.8 99.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9 98.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320460 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM202290 Mo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 38 Zm.15442.1.A1_at BM379425 Light-harvesting chlorophyll a/b binding protein - 9e-37 At2g34420 LHB1B2 C.G. S.X.
0.01 6e-2 38 Zm.12246.1.A1_at BM379517 growth inhibition and differentiation-related protein 88 - 4e-2 At5g22120 unknown protein C.G. S.X.
0.02 3e-1 36 Zm.2591.3.A1_x_at CF003515 autophagy-related 8b - 3e-48 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
0.02 3e-1 36 Zm.2591.2.A1_a_at BG836981 autophagy-related 8b - 2e-52 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
0.01 3e-1 36 Zm.13498.1.S1_at AY108746.1 membrane protein - 2e-4 At1g12750 ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) C.G. S.X.
0.02 1e+0 34 ZmAffx.1053.1.A1_at AI881846 - - 3e+0 At1g16240 SYP51 (SYNTAXIN OF PLANTS 51) C.G. S.X.
0.02 1e+0 34 ZmAffx.1053.1.S1_at AI881846 - - 5e-2 At4g37390 BRU6 C.G. S.X.
0.01 1e+0 34 Zm.7094.1.A1_a_at AW054223 60S ribosomal protein L7a - 5e-69 At3g62870 60S ribosomal protein L7A (RPL7aB) C.G. S.X.
0.01 1e+0 34 Zm.7094.1.A1_x_at AW054223 60S ribosomal protein L7a - 5e-69 At3g62870 60S ribosomal protein L7A (RPL7aB) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-8 59 Arabidopsis thaliana At5g63380 836457 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. - - - C.G. S.X.
0.07 5e-2 40 Glycine max Gma.5038.3.S1_s_at AW830151 - - 2e-9 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
0.39 1e-99 363 Hordeum vulgare Contig16738_at Contig16738 - - 2e-3 At1g20510 OPCL1 (OPC-8:0 COA LIGASE1) C.G. S.X.
0.47 4e-53 210 Oryza sativa Os01g0901500 BI813803 - 4-coumarate-CoA ligase-like protein 9e-1 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
0.10 2e-7 57 Populus trichocarpa PtpAffx.13512.2.S1_at CV257679 acyl:coa ligase - 7e-6 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
0.33 3e-55 216 Triticum aestivum TaAffx.97935.1.S1_at BQ801609 - - 4e-4 At1g20510 OPCL1 (OPC-8:0 COA LIGASE1) C.G. S.X.
0.13 2e-13 75 Vitis vinifera 1610552_at CF201894.1 - - 5e-10 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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