CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.7750.4.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 76.1 Zm.7750.4.S1_at AW499152 - - 3e-28 At1g75780 TUB1 S.X. H.G.
0.67 85.8 Zm.18084.1.A1_at CD997940 - - 8e-7 At1g16870 mitochondrial 28S ribosomal protein S29-related S.X. H.G.
0.61 79.5 Zm.11328.1.A1_at CA401316 hypothetical protein LOC100274553 - 6e+0 At2g30130 ASL5 S.X. H.G.
0.61 79.5 Zm.14898.1.A1_x_at BM351319 - - 4e+0 At3g43800 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) S.X. H.G.
0.58 75.1 ZmAffx.525.1.A1_at AI711680 - - 8e-1 At5g23170 protein kinase family protein S.X. H.G.
0.50 65.7 Zm.16316.1.A1_at CF244157 ATP binding protein - 2e-1 At5g19210 DEAD/DEAH box helicase, putative S.X. H.G.
0.47 59.9 Zm.11338.1.A1_at BM349130 hypothetical protein LOC100274516 - 3e-6 At2g40190 glycosyl transferase family 1 protein S.X. H.G.
0.47 59.9 ZmAffx.1017.1.A1_at AI881523 Hypothetical protein LOC100193713 - 3e+0 At3g25030 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.46 58.4 Zm.11611.1.A1_at BM379298 hypothetical protein LOC100192942 - 5e+0 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) S.X. H.G.
0.38 44.2 ZmAffx.531.1.A1_at AI711719 - - 8e-1 At5g20370 serine-rich protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.3 98.9 GSM375791 Deep-sowing 10d treatment GA3, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
15.3 98.9 GSM290554 WS2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
15.3 98.9 GSM375796 Deep-sowing 10d treatment GA3, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
13.3 98.8 GSM290556 CCR mutant M2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
12.9 98.7 GSM290553 WS1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
12.7 98.7 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
11.2 98.5 GSM385707 Deep-sowing 10d treatment IAA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
10.7 98.5 GSM385708 Deep-sowing 10d treatment IAA, biological rep2 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
10.5 98.4 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
10.4 98.4 GSM375795 Deep-sowing 10d treatment Control, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.95 0 795 Zm.7750.4.S1_x_at AW499152 - - 3e-28 At1g75780 TUB1 C.G. S.X.
0.31 6e-151 531 Zm.7750.2.S1_a_at AY103542.1 Beta-6 tubulin - 3e-155 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.31 6e-151 531 Zm.7750.2.S1_x_at AY103542.1 Beta-6 tubulin - 3e-155 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.31 6e-151 531 Zm.7750.2.S1_at AY103542.1 Beta-6 tubulin - 3e-155 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.21 1e-96 351 Zm.7750.1.S1_at L10633.1 beta-6 tubulin - 1e-151 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.16 9e-70 262 Zm.2458.1.S1_at CA403461 hypothetical protein LOC100273658 - 3e-108 At5g62700 TUB3 C.G. S.X.
0.17 5e-62 236 Zm.4718.1.S1_at L10636.1 beta-5 tubulin - 2e-174 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.15 3e-60 230 Zm.3257.1.S1_at L10635.1 hypothetical protein LOC100216865 /// beta-4 tubulin - 1e-67 At5g62700 TUB3 C.G. S.X.
0.17 3e-54 210 Zm.16988.3.S1_at CA404553 hypothetical protein LOC100272336 - 0 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 3e-28 125 Arabidopsis thaliana At1g75780 843911 TUB1 beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses - - - C.G. S.X.
0.34 9e-45 180 Glycine max Gma.17868.2.A1_s_at BQ253153 - - 2e-45 At5g62690 TUB2 C.G. S.X.
0.38 5e-53 206 Hordeum vulgare HVSMEf0002J15r2_x_at HVSMEf0002J15r2 - - 9e-19 At5g44340 TUB4 C.G. S.X.
0.20 1e-75 284 Oryza sativa Os01g0805900 D30716.1 - Tubulin beta-2 chain (Beta-2 tubulin) 0 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.35 2e-33 143 Populus trichocarpa PtpAffx.4495.2.A1_at CK087588 tubulin, beta chain - 6e-46 At1g75780 TUB1 C.G. S.X.
0.30 4e-74 278 Triticum aestivum Ta.28022.2.A1_at BJ309684 - - 1e-47 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.29 7e-39 159 Vitis vinifera 1615938_at CF208490 hypothetical protein LOC100244729 - 8e-51 At5g62700 TUB3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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