Gene omics information

Query gene ID	Zm.7750.3.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.7750.3.S1_at	AY105255.1	-	-	3e-35	At5g62690	TUB2	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.1142.1.A1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.71	88.2	ZmAffx.1316.1.S1_at	40794996-30	-	-	6e-1	At1g78172	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.7830.1.S1_at	BM080060	nucleic acid binding protein	-	4e-1	At2g03190	ASK16 (ARABIDOPSIS SKP1-LIKE 16)	S.X.	H.G.	Please select
0.55	71.6	Zm.7016.1.A1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	S.X.	H.G.	Please select
0.43	52.8	Zm.17818.1.A1_at	CK145213	-	-	6e+0	At5g52470	FIB1 (FIBRILLARIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.0	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.3	96.9	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.9	96.7	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.6	96.4	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.1	95.9	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.9	95.7	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.9	95.7	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.5	95.1	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1297	Zm.7750.3.A1_at	CB604740	-	-	1e-22	At1g20010	TUB5	C.G.	S.X.	Please select
0.59	1e-177	621	Zm.16988.4.A1_at	AW498129	-	-	3e-54	At5g62690	TUB2	C.G.	S.X.	Please select
0.27	4e-122	436	Zm.2458.1.S1_at	CA403461	hypothetical protein LOC100273658	-	3e-108	At5g62700	TUB3	C.G.	S.X.	Please select
0.27	3e-70	264	Zm.7750.1.S1_at	L10633.1	beta-6 tubulin	-	1e-151	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.24	3e-67	254	Zm.3257.1.S1_at	L10635.1	hypothetical protein LOC100216865 /// beta-4 tubulin	-	1e-67	At5g62700	TUB3	C.G.	S.X.	Please select
0.25	8e-65	246	Zm.7172.1.A1_at	X74654.1	beta3 tubulin	-	1e-76	At5g62700	TUB3	C.G.	S.X.	Please select
0.23	1e-54	212	Zm.7750.2.S1_a_at	AY103542.1	Beta-6 tubulin	-	3e-155	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.23	1e-54	212	Zm.7750.2.S1_x_at	AY103542.1	Beta-6 tubulin	-	3e-155	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.23	1e-54	212	Zm.7750.2.S1_at	AY103542.1	Beta-6 tubulin	-	3e-155	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	3e-35	149	Arabidopsis thaliana	At5g62690	836390	TUB2	encodes tubulin beta-2/beta-3 chain	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	8e-37	155	Glycine max	Gma.17868.2.A1_s_at	BQ253153	-	-	2e-45	At5g62690	TUB2	C.G.	S.X.	Please select
0.50	2e-139	494	Hordeum vulgare	Contig1516_s_at	Contig1516	-	-	3e-72	At5g62700	TUB3	C.G.	S.X.	Please select
0.28	2e-69	264	Oryza sativa	Os05g0413200	AB104732.1	-	Beta-tubulin	4e-114	At5g62690	TUB2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	1e-29	131	Populus trichocarpa	Ptp.6328.2.S1_s_at	CK087416	tubulin, beta chain	-	9e-86	At4g20890	TUB9	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	5e-102	371	Triticum aestivum	Ta.28022.2.A1_at	BJ309684	-	-	1e-47	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.36	4e-41	167	Vitis vinifera	1609398_at	CF413640	hypothetical protein LOC100261736	-	3e-66	At5g23860	TUB8	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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