Gene omics information

Query gene ID	Zm.7750.3.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	96.8	Zm.7750.3.A1_at	CB604740	-	-	1e-22	At1g20010	TUB5	S.X.	H.G.	Please select
0.36	41.3	Zm.15418.1.A1_at	AY109016.1	Hypothetical protein LOC100191383	-	1e+1	At5g43570	serine-type endopeptidase inhibitor	S.X.	H.G.	Please select
0.24	19.8	Zm.7826.1.S1_a_at	CO532898	hypothetical protein LOC100279851 /// HVA22-like protein a	-	1e-1	At4g38160	pde191 (pigment defective 191)	S.X.	H.G.	Please select
0.21	15.5	Zm.186.1.S1_at	X71396.1	Bowman-Birk type wound-induced proteinase inhibitor WIP1	-	1e+0	At1g20000	TAF11b (TBP-ASSOCIATED FACTOR 11b)	S.X.	H.G.	Please select
0.19	12.8	Zm.218.1.A1_at	AB016802.1	MAP kinase 5	-	2e-50	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select
0.18	11.6	Zm.2780.1.A1_at	CF057723	hypothetical protein LOC100278371	-	4e-1	At1g14270	CAAX amino terminal protease family protein	S.X.	H.G.	Please select
0.16	9.4	Zm.4467.1.S1_a_at	AW054142	hypothetical protein LOC100193777	-	1e-5	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	S.X.	H.G.	Please select
0.16	9.4	Zm.2541.1.A1_at	CF629797	cortical cell-delineating protein	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	S.X.	H.G.	Please select
0.09	4.0	Zm.8654.1.A1_at	BM334074	hypothetical protein LOC100280034	-	3e-2	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.3	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.4	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1297	Zm.7750.3.S1_at	AY105255.1	-	-	3e-35	At5g62690	TUB2	C.G.	S.X.	Please select
0.55	1e-177	621	Zm.16988.4.A1_at	AW498129	-	-	3e-54	At5g62690	TUB2	C.G.	S.X.	Please select
0.27	4e-122	436	Zm.2458.1.S1_at	CA403461	hypothetical protein LOC100273658	-	3e-108	At5g62700	TUB3	C.G.	S.X.	Please select
0.12	3e-70	264	Zm.7750.1.S1_at	L10633.1	beta-6 tubulin	-	1e-151	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.14	3e-67	254	Zm.3257.1.S1_at	L10635.1	hypothetical protein LOC100216865 /// beta-4 tubulin	-	1e-67	At5g62700	TUB3	C.G.	S.X.	Please select
0.14	8e-65	246	Zm.7172.1.A1_at	X74654.1	beta3 tubulin	-	1e-76	At5g62700	TUB3	C.G.	S.X.	Please select
0.12	1e-54	212	Zm.7750.2.S1_a_at	AY103542.1	Beta-6 tubulin	-	3e-155	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.12	1e-54	212	Zm.7750.2.S1_x_at	AY103542.1	Beta-6 tubulin	-	3e-155	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.12	1e-54	212	Zm.7750.2.S1_at	AY103542.1	Beta-6 tubulin	-	3e-155	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-22	107	Arabidopsis thaliana	At1g20010	838590	TUB5	beta tubulin	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	5e-35	149	Glycine max	GmaAffx.91773.1.S1_at	CF807498	-	-	2e-82	At2g29550	TUB7	C.G.	S.X.	Please select
0.50	2e-139	494	Hordeum vulgare	Contig1516_s_at	Contig1516	-	-	3e-72	At5g62700	TUB3	C.G.	S.X.	Please select
0.27	2e-130	466	Oryza sativa	Os02g0167300	D30717.1	-	Tubulin beta-3 chain (Beta-3 tubulin)	3e-179	At5g62700	TUB3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	8e-40	165	Populus trichocarpa	PtpAffx.26721.1.A1_s_at	BP935012	-	-	3e-38	At5g62700	TUB3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	5e-102	371	Triticum aestivum	Ta.28022.2.A1_at	BJ309684	-	-	1e-47	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.36	4e-41	167	Vitis vinifera	1609398_at	CF413640	hypothetical protein LOC100261736	-	3e-66	At5g23860	TUB8	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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