Gene omics information

Query gene ID	Zm.7739.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.7739.1.A1_at	BQ538356	-	-	6e+0	At1g49260	-	S.X.	H.G.	Please select
0.65	82.1	Zm.17724.1.S1_a_at	CF623515	hypothetical protein LOC100278419	-	1e+0	At3g56240	CCH (COPPER CHAPERONE)	S.X.	H.G.	Please select
0.64	81.7	Zm.12433.1.S1_s_at	AY105016.1	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.6228.1.A1_at	AI739920	-	-	1e+0	At1g64370	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.18278.1.S1_at	CK371368	-	-	1e-26	At3g52200	LTA3	S.X.	H.G.	Please select
0.52	67.3	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	S.X.	H.G.	Please select
0.51	66.4	Zm.13417.1.A1_at	CA400681	hypothetical protein LOC100193979	-	4e-1	At3g05830	-	S.X.	H.G.	Please select
0.50	65.7	Zm.9267.1.A1_at	BM267708	hypothetical protein AY107012 /// UPF0497 membrane protein 7	-	2e+0	At2g36210	auxin-responsive family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.11547.1.S1_at	CA827895	hypothetical protein LOC100276375	-	1e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	S.X.	H.G.	Please select
0.43	52.8	Zm.218.1.A1_a_at	AB016802.1	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
55.4	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
40.3	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.7	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	7e-13	73	Zm.6381.1.A1_at	CO534945	hypothetical protein LOC100273528	-	2e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.3738.1.S1_at	BM334767	hypothetical protein LOC100191896	-	6e-1	At2g13770	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.44.1.S1_at	D49475.1	glutamic dehydrogenase1	-	9e-44	At3g03910	GDH3 (GLUTAMATE DEHYDROGENASE 3)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5926.1.S1_at	AY104624.1	-	-	1e-8	At4g16070	lipase class 3 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4436.1.S1_s_at	CK370919	hypothetical protein LOC100192748	-	2e+0	At2g18120	SRS4 (SHI-RELATED SEQUENCE 4)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.2161.1.A1_at	BI675088	hypothetical protein LOC100191874	-	3e+0	At2g29180	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17806.1.A1_at	CF634845	-	-	5e-1	At1g73885	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.8445.1.S1_at	BM078620	hypothetical protein LOC100193211	-	5e-4	At2g23780	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.6946.1.A1_at	CO528667	hypothetical protein LOC100191975	-	2e-10	At1g11680	CYP51G1 (CYTOCHROME P450 51G1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At1g49260	841350	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e+0	32	Glycine max	PsAffx.psZG010xI04f_at	PsAffx.psZG010xI04f	-	-	4e+0	At4g16265	NRPB9B	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	EBpi03_SQ003_A03_s_at	EBpi03_SQ003_A03	-	-	6e-4	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.06	1e-8	61	Oryza sativa	Os05g0406800	AK062566.1	-	Leucine-rich repeat, plant specific containingprotein	2e-2	At3g53235	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.79261.2.S1_at	CV245540	-	-	2e-11	At3g19900	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	TaAffx.104873.1.S1_at	CA743694	-	-	7e-1	At2g45520	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Vitis vinifera	1622607_at	AF271662.1	hypothetical protein LOC100250080	-	1e-8	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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