CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.7727.4.S1_s_at

Gene name polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.8 Zm.7727.4.S1_s_at CF972403 polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin - 2e-102 At4g05320 UBQ10 (POLYUBIQUITIN 10) S.X. H.G.
0.80 94.0 Zm.18351.1.S1_at CO529439 - - 2e+0 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) S.X. H.G.
0.73 89.9 Zm.18352.1.S1_at CO527044 glucan endo-1,3-beta-glucosidase, acidic isoform - 1e+1 At5g62470 MYB96 (myb domain protein 96) S.X. H.G.
0.73 89.9 Zm.13016.1.A1_at CA403346 hypothetical protein LOC100277160 - 2e+0 At1g22160 senescence-associated protein-related S.X. H.G.
0.60 77.8 Zm.3358.2.S1_at AY105740.1 - - 7e+0 At2g44420 protein N-terminal asparagine amidohydrolase family protein S.X. H.G.
0.53 69.1 Zm.6606.1.A1_at AI467702 hypothetical protein LOC100272956 - 8e-7 At3g53500 zinc knuckle (CCHC-type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.1 90.8 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.1 90.8 GSM206314 Upper pulvinus 15 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.1 90.8 GSM206291 Upper pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.1 90.8 GSM206320 Lower pulvinus 15 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.0 90.2 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.0 90.2 GSM206289 Upper pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
1.9 89.6 GSM206324 Upper pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
1.9 89.6 GSM206301 Upper pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
1.9 89.6 GSM206333 Lower pulvinus 30 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
1.8 88.9 GSM206323 Left pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 1358 Zm.7727.1.S1_s_at CK986121 polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin - 5e-129 At5g20620 UBQ4 C.G. S.X.
0.67 0 1158 Zm.2925.1.A1_at BM338886 polyubiquitin containing 7 ubiquitin monomers - 1e-160 At4g05320 UBQ10 (POLYUBIQUITIN 10) C.G. S.X.
0.24 3e-109 395 Zm.14424.1.S1_at AW330924 hypothetical protein LOC100275964 - 5e-32 At1g65350 UBQ13 C.G. S.X.
0.35 9e-94 343 Zm.12132.3.S1_a_at AI461523 hypothetical protein LOC100192680 - 4e-50 At5g03240 UBQ3 (POLYUBIQUITIN 3) C.G. S.X.
0.19 2e-63 242 Zm.2925.2.S1_at BG836389 - - 4e-63 At2g47110 UBQ6 C.G. S.X.
0.18 2e-61 236 Zm.15971.1.S1_at CF638101 40S ribosomal protein S27a - 1e-44 At2g47110 UBQ6 C.G. S.X.
0.19 4e-59 228 Zm.2925.3.A1_at CF002413 Ubiquitin - 4e-41 At2g47110 UBQ6 C.G. S.X.
0.24 6e-55 214 Zm.7727.5.A1_at AI782981 - - 1e-25 At4g02890 UBQ14 C.G. S.X.
0.15 1e-43 176 Zm.16530.3.S1_at CF634413 - - 1e-72 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 2e-102 373 Arabidopsis thaliana At4g05320 825880 UBQ10 (POLYUBIQUITIN 10) One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. - - - C.G. S.X.
0.62 3e-161 569 Glycine max GmaAffx.93644.1.S1_x_at CF806647 Ubiquitin - 7e-139 At4g05320 UBQ10 (POLYUBIQUITIN 10) C.G. S.X.
0.71 0 847 Hordeum vulgare Contig1078_x_at Contig1078 - - 0 At4g02890 UBQ14 C.G. S.X.
0.67 0 722 Oryza sativa Os06g0681400 U37687.1 - Polyubiquitin 1e-160 At4g05320 UBQ10 (POLYUBIQUITIN 10) C.G. S.X.
0.62 1e-129 464 Populus trichocarpa Ptp.2583.1.S1_at CV236763 - - 4e-178 At5g20620 UBQ4 C.G. S.X.
0.63 0 1003 Triticum aestivum Ta.28553.13.S1_at BJ300199 - - 5e-138 At4g05320 UBQ10 (POLYUBIQUITIN 10) C.G. S.X.
0.57 9e-124 442 Vitis vinifera 1616334_a_at CB917599 - - 0 At4g05320 UBQ10 (POLYUBIQUITIN 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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