Gene omics information

Query gene ID	Zm.7727.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.7727.2.S1_at	CF972330	-	-	1e-1	At4g13800	permease-related	S.X.	H.G.	Please select
0.55	71.6	Zm.16281.2.S1_at	CA409032	Histone H3.2	-	9e-21	At5g10980	histone H3	S.X.	H.G.	Please select
0.40	48.5	Zm.960.1.S1_at	BU093044	hypothetical protein LOC100274333	-	1e-4	At2g22830	SQE2 (squalene epoxidase 2)	S.X.	H.G.	Please select
0.11	5.3	Zm.13188.1.A1_a_at	AY103625.1	hypothetical protein LOC100193240 /// hypothetical protein LOC100193556	-	5e-32	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	S.X.	H.G.	Please select
0.06	2.3	Zm.5113.2.A1_a_at	CF633388	-	-	1e+0	At3g18590	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.05	1.9	Zm.18353.1.A1_at	AY111403.1	hypothetical protein LOC100280196	-	2e+0	At1g16640	transcriptional factor B3 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.9	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.5	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.76	0	1344	Zm.7727.2.A1_at	BU050759	hypothetical protein LOC100272686	-	1e-1	At4g13800	permease-related	C.G.	S.X.	Please select
0.07	6e-42	171	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.06	6e-42	171	Zm.7727.1.S1_s_at	CK986121	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	5e-129	At5g20620	UBQ4	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.15564.1.A1_at	CD446261	ZCN11 protein	-	5e-1	At1g18100	E12A11	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.5776.1.A1_at	CO520963	hypothetical protein LOC100273913	-	9e-2	At2g47140	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.8993.1.A1_a_at	AI649732	hypothetical protein LOC100194128 /// hypothetical protein LOC100194385	-	2e-27	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.8993.1.A1_at	AI649732	hypothetical protein LOC100194128	-	2e-27	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.4664.1.A1_at	AI737885	fatty acid elongase	-	2e-1	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.2037.1.S1_a_at	CD219439	-	-	2e-1	At2g39855	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At4g13800	827014	permease-related	F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.79845.1.A1_at	AI960711	-	-	9e-2	At1g68030	PHD finger protein-related	C.G.	S.X.	Please select
0.08	2e-5	50	Hordeum vulgare	Contig18809_at	Contig18809	-	-	2e+0	At5g66090	unknown protein	C.G.	S.X.	Please select
0.04	1e-6	56	Oryza sativa	Os08g0478500	AK099704.1	-	Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein	2e-3	At4g24560	UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.18907.1.A1_at	CV229324	hypothetical protein	-	8e-1	At1g68935	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	9e-3	42	Triticum aestivum	Ta.30454.1.A1_at	CK209066	-	-	2e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	9e+0	30	Vitis vinifera	1609194_at	CF209354	-	-	1e-12	At5g53020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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