CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.7720.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.6 Zm.7720.1.S1_at CK347322 - - 2e-10 At2g21630 transport protein, putative S.X. H.G.
0.77 92.1 Zm.15626.1.S1_at CA404507 - - 1e-8 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) S.X. H.G.
0.77 92.1 Zm.17158.3.A1_at BM078932 - - 4e+0 At3g08920 rhodanese-like domain-containing protein S.X. H.G.
0.77 92.1 Zm.3864.1.A1_at AY106452.1 calmodulin2 - 8e-80 At3g56800 CAM3 (CALMODULIN 3) S.X. H.G.
0.73 89.9 Zm.12573.1.A1_a_at BI233467 hypothetical protein LOC100192765 /// hypothetical protein LOC100276406 - 2e+0 At3g20450 - S.X. H.G.
0.67 85.8 Zm.2376.7.A1_at BM079913 - - 2e-2 At5g60370 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.4 94.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4 94.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0 94.0 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9 93.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7 93.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6 92.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4 92.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3 91.7 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.3 91.7 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-8 59 Zm.813.2.A1_at AY103619.1 - - 5e-15 At4g14160 transport protein, putative C.G. S.X.
0.02 1e+0 34 Zm.12208.1.A1_at BM736144 - - 3e-4 At3g14630 CYP72A9 C.G. S.X.
0.02 4e+0 32 Zm.9813.1.A1_at BM333784 serine esterase family protein - 2e+0 At5g51180 unknown protein C.G. S.X.
0.02 4e+0 32 Zm.9570.1.A1_a_at BM337218 hypothetical protein LOC100279354 - 2e+1 Atcg00330 - C.G. S.X.
0.02 4e+0 32 Zm.9570.1.A1_x_at BM337218 hypothetical protein LOC100279354 - 2e+1 Atcg00330 - C.G. S.X.
0.02 4e+0 32 Zm.9570.2.A1_x_at BM078097 - - 5e+0 At3g22070 proline-rich family protein C.G. S.X.
0.02 4e+0 32 Zm.8562.1.A1_s_at CA403409 - - 1e+0 At2g33255 catalytic/ hydrolase/ phosphoglycolate phosphatase C.G. S.X.
0.01 4e+0 32 Zm.7856.1.A1_at CA400312 - - 6e-1 At3g09700 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 4e+0 32 Zm.5435.1.A1_at CO519825 mTERF-like protein - 1e+0 At3g60870 DNA-binding protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-10 67 Arabidopsis thaliana At2g21630 816701 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP - - - C.G. S.X.
0.14 3e-19 97 Glycine max Gma.8062.3.A1_at BU080851 - - 8e-1 At1g05520 transport protein, putative C.G. S.X.
0.54 2e-172 605 Hordeum vulgare Contig8476_at Contig8476 - - 2e-19 At3g23660 transport protein, putative C.G. S.X.
0.38 0 763 Oryza sativa Os08g0474700 AK064878.1 - - 1e-13 At2g21630 transport protein, putative C.G. S.X.
0.14 9e-7 56 Populus trichocarpa PtpAffx.9338.1.S1_at CV277072 hypothetical protein - 9e-25 At2g21630 transport protein, putative C.G. S.X.
0.45 2e-142 506 Triticum aestivum Ta.7660.1.S1_at BU099612 - - 6e-5 At1g05520 transport protein, putative C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1611092_at CF208653 - - 3e-1 At3g51890 protein binding / structural molecule C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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