Gene omics information

Query gene ID	Zm.7707.1.S1_a_at
Gene name	Hypothetical protein LOC100193555
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.7707.1.S1_a_at	CK985938	Hypothetical protein LOC100193555	-	1e-2	At4g37210	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.80	94.0	Zm.7707.2.A1_at	BM334255	-	-	5e+0	At4g38930	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.9396.1.A1_x_at	CB350631	early light-inducible protein ELIP	-	5e+1	At5g35090	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.1630.1.S1_at	AW927809	-	-	4e-1	At2g34340	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.188.1.S1_s_at	CF017153	yptm1 protein	-	2e-34	At3g11730	ATFP8	S.X.	H.G.	Please select
0.15	8.6	Zm.445.2.A1_at	AF457968.1	Lipoxygenase	-	4e+0	At5g47600	heat shock protein-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.2	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.4	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	2e-160	565	Zm.7707.2.A1_at	BM334255	-	-	5e+0	At4g38930	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select
0.01	1e-3	44	Zm.167.1.A1_at	CF632910	phosphoenolpyruvate carboxylase	-	1e-50	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	C.G.	S.X.	Please select
0.02	6e-3	42	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	C.G.	S.X.	Please select
0.03	6e-3	42	Zm.6246.2.A1_at	AI677558	-	-	9e-7	At2g22080	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.7309.1.S1_s_at	AF384036.1	nucleosome/chromatin assembly factor A /// nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.7309.1.S1_at	AF384036.1	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.837.1.A1_at	BG320171	hypothetical protein LOC100272396	-	1e-40	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.3971.1.A1_at	AY105137.1	-	-	5e-1	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.3971.1.S1_at	AI820113	hypothetical protein LOC100275101	-	5e-1	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-2	42	Arabidopsis thaliana	At4g37210	829875	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-2	40	Glycine max	Gma.15426.3.S1_at	BQ081124	-	-	5e-3	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.29	1e-41	171	Hordeum vulgare	Contig8194_at	Contig8194	-	-	2e-7	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.22	3e-48	194	Oryza sativa	Os07g0122400	AK066848.1	-	TPR repeat containing protein	3e-8	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e+0	34	Populus trichocarpa	PtpAffx.89095.1.A1_at	CV239179	hypothetical protein	-	2e-6	At5g11460	senescence-associated protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	2e-50	200	Triticum aestivum	Ta.17201.1.S1_at	CA618760	-	-	3e-4	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	6e-2	38	Vitis vinifera	1608560_at	CF405443	hypothetical protein LOC100250989	-	3e+0	At3g09890	ankyrin repeat family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage