Gene omics information

Query gene ID	Zm.7671.1.A1_at
Gene name	hypothetical protein LOC100272470
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.7671.1.A1_at	BM073122	hypothetical protein LOC100272470	-	8e-2	At4g00232	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.13185.1.A1_at	AY104045.1	-	-	1e-22	At3g13060	-	S.X.	H.G.	Please select
0.61	79.5	Zm.9311.1.A1_a_at	BG842505	hypothetical protein LOC100274965	-	5e+0	At2g29180	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.11636.1.A1_at	BM379473	-	-	4e+0	At5g07160	DNA binding / transcription factor	S.X.	H.G.	Please select
0.55	71.6	Zm.7541.1.A1_at	BM341407	hypothetical protein LOC100192095	-	6e+0	At3g43110	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.7938.1.A1_at	BM079591	glycosyltransferase	-	7e+0	At5g42567	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.1	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
37.0	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.9	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.4	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	Zm.10192.1.A1_at	BM335866	-	-	5e+0	At5g67500	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7091.2.A1_at	AY103838.1	Chlorophyll a/b-binding apoprotein CP24 precursor	-	2e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7091.1.A1_at	U23190.1	Chlorophyll a/b-binding apoprotein CP24 precursor	-	3e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7091.1.A1_x_at	U23190.1	chlorophyll a/b-binding apoprotein CP24 precursor	-	3e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7091.2.S1_a_at	AY103838.1	chlorophyll a/b-binding apoprotein CP24 precursor	-	2e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5185.1.A1_at	AI711952	hypothetical protein LOC100280305	-	1e-36	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4733.1.A1_at	CD441088	hypothetical protein LOC100193930	-	2e-14	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18924.1.A1_at	CO532713	hypothetical protein LOC100280163	-	1e-2	At3g15040	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-2	38	Arabidopsis thaliana	At4g00232	826492	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.20514.1.A1_at	AI442824	-	-	6e-8	At3g02000	ROXY1	C.G.	S.X.	Please select
0.04	6e-1	34	Hordeum vulgare	HVSMEc0001C18f2_s_at	HVSMEc0001C18f2	-	-	7e-1	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os03g0239066	9631.m01290	-	-	1e+0	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.214902.1.S1_at	pmrna28819	hypothetical protein	-	3e-1	At3g10970	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	TaAffx.53026.1.S1_at	CA697544	-	-	6e+0	At5g20640	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621328_at	CK138241.1	-	-	9e-1	At4g18470	SNI1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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