Gene omics information

Query gene ID	Zm.7591.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.7591.1.A1_at	CK347203	-	-	2e+0	At1g26945	KDR (KIDARI)	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.487.1.A1_at	AI691420	-	-	5e+0	At3g14190	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.6905.4.S1_a_at	AI881845	Histone H1-like protein	-	2e-1	At1g07980	NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10)	S.X.	H.G.	Please select
0.38	44.2	Zm.2748.2.A1_at	AY104265.1	-	-	2e+0	At5g54880	DTW domain-containing protein	S.X.	H.G.	Please select
0.36	41.3	Zm.2517.4.A1_x_at	CA399084	z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// hypothetical protein LOC100274904 /// zein polypeptidesL2b	-	2e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.17	10.6	Zm.17606.1.S1_at	BM335195	-	-	2e-1	At1g07570	APK1A	S.X.	H.G.	Please select
0.17	10.6	Zm.17642.1.A1_at	CF038814	hypothetical protein LOC100193587	-	2e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select
0.09	4.0	Zm.4691.1.A1_at	AI734661	-	-	1e+0	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	S.X.	H.G.	Please select
0.09	4.0	Zm.6905.4.S1_at	AI881845	Histone H1-like protein	-	2e-1	At1g07980	NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.2	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.1	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.5	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.1	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-2	38	Zm.4986.3.A1_at	AI770643	hypothetical protein LOC100279549	-	7e-26	At5g15490	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.4986.1.S1_at	BG873746	hypothetical protein LOC100279549	-	2e-91	At3g29360	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.4986.1.S1_a_at	BG873746	hypothetical protein LOC100279549	-	2e-91	At3g29360	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.4986.1.S1_x_at	BG873746	hypothetical protein LOC100279549	-	2e-91	At3g29360	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.03	5e-2	38	Zm.4986.3.S1_a_at	AI770643	hypothetical protein LOC100279549 /// UDP-glucose 6-dehydrogenase	-	7e-26	At5g15490	UDP-glucose 6-dehydrogenase, putative	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.6368.1.A1_at	AY110500.1	ZAC	-	4e-1	At4g21160	ZAC	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8723.1.A1_a_at	BM351794	hypothetical protein LOC100277811	-	3e-1	At3g28321	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.8076.1.A1_at	AY108671.1	3-isopropylmalate dehydratase large subunit 2	-	7e-45	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.7517.1.A1_at	BM078773	hypothetical protein LOC100217133	-	2e-5	At4g36350	PAP25 (PURPLE ACID PHOSPHATASE 25)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g26945	839585	KDR (KIDARI)	Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.21776.1.A1_at	BM526079	-	-	2e-2	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.18	2e-8	59	Hordeum vulgare	Contig19713_at	Contig19713	-	-	4e+0	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.22	5e-52	206	Oryza sativa	OsAffx.26545.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.82534.1.A1_at	CV242946	hypothetical protein	-	1e+1	At5g01590	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.18959.1.S1_at	CA644818	-	-	2e-1	At5g59845	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.02	9e+0	30	Vitis vinifera	1619866_at	BQ794589	hypothetical protein LOC100264681	-	3e-1	At1g06010	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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