Gene omics information

Query gene ID	Zm.7564.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.7564.1.A1_at	BM078962	-	-	4e-1	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	S.X.	H.G.	Please select
0.67	85.8	Zm.2321.6.A1_at	AI677502	hypothetical protein LOC100277354	-	3e-3	At3g28970	AAR3 (antiauxin-resistant 3)	S.X.	H.G.	Please select
0.57	75.1	Zm.18111.1.S1_at	CF632606	peroxidase 17	-	8e-4	At2g22420	peroxidase 17 (PER17) (P17)	S.X.	H.G.	Please select
0.44	55.7	Zm.13871.1.A1_at	AF099434.1	R2R3MYB-domain protein	-	2e-5	At1g08810	MYB60 (myb domain protein 60)	S.X.	H.G.	Please select
0.44	55.7	Zm.2454.1.A1_at	AW216305	DNA-binding protein	-	3e-4	At4g25320	DNA-binding protein-related	S.X.	H.G.	Please select
0.38	44.2	Zm.11255.1.S1_at	AY107659.1	hypothetical protein LOC100217136	-	3e-32	At5g40200	DegP9 (DegP protease 9)	S.X.	H.G.	Please select
0.37	42.3	Zm.6105.1.S1_at	BG517834	-	-	4e+0	At2g27280	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.3775.1.A1_at	AY103856.1	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.7	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-4	44	Zm.13484.1.A1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.04	6e-4	44	Zm.13484.1.S1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.9922.1.A1_at	BM349085	-	-	1e-3	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.4555.1.A1_at	AI734771	-	-	5e+0	At5g10580	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.18048.1.A1_at	CF624002	-	-	5e+0	At2g32580	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.5785.1.S1_at	BM269195	S-adenosylmethionine synthetase 1	-	1e-86	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.546.1.A1_at	AF244681.1	glutathione transferase16	-	1e-1	At1g01225	NC domain-containing protein-related	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4297.1.S1_at	AI714962	proteasome subunit alpha type 1	-	1e-8	At5g42790	PAF1	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.3150.1.S1_at	BM080786	hypothetical protein LOC100216996	-	1e-3	At3g12203	scpl17 (serine carboxypeptidase-like 17)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At3g59060	825075	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	HgAffx.4235.1.S1_x_at	CK350990	-	-	8e-1	At2g43140	DNA binding / transcription factor	C.G.	S.X.	Please select
0.05	1e-2	40	Hordeum vulgare	Contig26283_at	Contig26283	-	-	2e+0	At4g18070	unknown protein	C.G.	S.X.	Please select
0.04	1e-8	61	Oryza sativa	Os12g0125000	AK061437.1	-	Myb factor	1e-8	At1g08810	MYB60 (myb domain protein 60)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.223960.1.S1_s_at	pmrna42186	hypothetical protein	-	3e+0	At2g06255	ELF4-L3 (ELF4-Like 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-2	38	Triticum aestivum	Ta.9365.2.S1_at	BJ301402	-	-	6e-1	At3g46030	HTB11	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1620857_at	CF207003.1	-	-	4e-2	At1g13635	methyladenine glycosylase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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