CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.7543.1.A1_at

Gene name hypothetical protein LOC100192002

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.7543.1.A1_at CD997722 hypothetical protein LOC100192002 - 4e-6 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative S.X. H.G.
0.67 85.8 Zm.10170.2.S1_at BM078288 Hypothetical protein LOC100194222 - 3e-14 At5g56140 KH domain-containing protein S.X. H.G.
0.67 85.8 Zm.2321.3.A1_a_at BG841291 hypothetical protein LOC100191581 /// hypothetical protein LOC100274569 - 3e-9 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) S.X. H.G.
0.57 75.1 Zm.9031.1.S1_at CD441372 chloroplast Cu-Zn superoxide dismutase - 8e-37 At2g28190 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) S.X. H.G.
0.29 28.1 Zm.7544.1.A1_at BM334017 mRNA - 3e-2 At3g20650 mRNA capping enzyme family protein S.X. H.G.
0.27 24.6 Zm.4027.2.A1_at CO527250 hypothetical protein LOC100272558 - 6e-1 At1g49600 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.4 96.2 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.5 95.1 GSM202320 B73 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.4 94.9 GSM202318 B73xMo17 19 day after pollination embryo tissue, biological replicate 2 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.4 94.9 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM202315 B73 19 day after pollination embryo tissue, biological replicate 2 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.2 94.5 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM202310 B73 19 day after pollination embryo tissue, biological replicate 1 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 34 Zm.5883.1.A1_at BE761660 RNA binding protein - 1e-1 At3g06180 structural constituent of ribosome C.G. S.X.
0.01 2e+0 34 Zm.13647.1.S1_at AY107242.1 metal transporter Nramp3 - 3e-12 At5g67330 ATNRAMP4 C.G. S.X.
0.01 6e+0 32 ZmAffx.832.1.A1_at AI770560 - - 5e-2 At5g51990 CBF4 (C- REPEAT-BINDING FACTOR 4) C.G. S.X.
0.01 6e+0 32 ZmAffx.832.1.S1_at AI770560 hypothetical protein LOC100274340 - 5e-2 At5g51990 CBF4 (C- REPEAT-BINDING FACTOR 4) C.G. S.X.
0.01 6e+0 32 Zm.9708.1.A1_at BQ538651 DNA binding protein - 4e-1 At4g16160 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein C.G. S.X.
0.02 6e+0 32 Zm.8683.1.A1_at BM266358 hypothetical protein LOC100273977 - 4e+0 At5g52605 - C.G. S.X.
0.01 6e+0 32 Zm.7565.1.A1_at BM078965 DNA-directed RNA polymerase II 8.2 kDa polypeptide /// DNA-directed RNA polymerase II 8.2 kDa polypeptide /// DNA-directed RNA polymerase II 8.2 kDa polypeptide - 3e-7 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) C.G. S.X.
0.01 6e+0 32 Zm.6274.1.A1_at AI691216 - - 9e-16 At5g27840 TOPP8 C.G. S.X.
0.01 6e+0 32 Zm.6261.1.A1_at AY105522.1 hypothetical protein LOC100217288 - 4e-8 At1g04950 TAF6 (TBP-ASSOCIATED FACTOR 6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-6 54 Arabidopsis thaliana At1g66530 842971 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative F:aminoacyl-tRNA ligase activity, nucleotide binding, arginine-tRNA ligase activity, ATP binding;P:arginyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;OBMAFPV - - - C.G. S.X.
0.05 2e-2 42 Glycine max GmaAffx.64453.1.S1_at BM143153 - - 3e+0 At4g04953 unknown protein C.G. S.X.
0.51 2e-145 515 Hordeum vulgare Contig9377_at Contig9377 - - 4e-27 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.37 2e-148 527 Oryza sativa Os05g0163000 AK066161.1 - Arginyl-tRNA synthetase, class Ic family protein 2e-20 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.15 2e-21 105 Populus trichocarpa Ptp.1743.1.A1_a_at CV271562 hypothetical protein - 3e-45 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.36 9e-146 517 Triticum aestivum Ta.2176.1.S1_at CK206562 - - 1e-25 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.06 1e+0 34 Vitis vinifera 1620282_at CB977969 hypothetical protein LOC100243325 - 5e+0 At5g13440 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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