Gene omics information

Query gene ID	Zm.7440.1.A1_at
Gene name	hypothetical protein LOC100273378
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.7440.1.A1_at	BM380339	hypothetical protein LOC100273378	-	5e-1	At2g14660	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.1030.1.A1_at	AY106168.1	-	-	6e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	S.X.	H.G.	Please select
0.60	77.8	Zm.10577.1.A1_at	BQ538417	-	-	5e-1	At5g55630	ATKCO1	S.X.	H.G.	Please select
0.60	77.8	Zm.156.1.A1_at	L06478.1	opaque2 heterodimerizing protein2	-	1e-2	At3g54620	BZIP25 (BASIC LEUCINE ZIPPER 25)	S.X.	H.G.	Please select
0.50	65.7	Zm.10347.1.S1_s_at	AF012888.1	Tousled-like kinase 1 /// Tousled-like kinase 2	-	3e-52	At5g20930	TSL (TOUSLED)	S.X.	H.G.	Please select
0.40	48.5	Zm.18110.1.S1_at	AY620409.1	arginine/serine-rich splicing factor 2 variant 2 /// arginine/serine-rich splicing factor 2 variant 3	-	3e-8	At3g61860	RSP31	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.7	98.7	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM258172	B37 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.9	97.7	GSM258177	B37xB73 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.6	97.6	GSM258178	B84xB73 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.3	97.4	GSM258173	B73 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.1	97.4	GSM258174	B84 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.9	97.3	GSM258199	B14a 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
5.8	97.2	GSM258179	Oh43xB73 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-2	40	Zm.3590.1.A1_at	BQ619098	-	-	9e-7	At4g38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.18283.1.A1_at	BG841297	hypothetical protein LOC100217202 /// hypothetical protein LOC100217213	-	5e+0	At5g49540	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.16971.1.A1_s_at	AJ606944.1	cytokinin oxidase 2 /// cytokinin oxidase 3	-	8e-11	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.16971.1.A1_at	AJ606944.1	cytokinin oxidase 3	-	8e-11	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.6415.1.A1_at	CA404763	-	-	4e-3	At2g45730	eukaryotic initiation factor 3 gamma subunit family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.618.1.S1_at	AF326506.1	tonoplast membrane integral protein ZmTIP4-2	-	1e-2	At2g25810	TIP4	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.617.1.A1_at	AF326505.1	tonoplast membrane integral protein ZmTIP4-1	-	4e-2	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.3829.1.S1_at	BM335816	-	-	1e-15	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.3702.1.S1_at	AY104414.1	geranylgeranyl hydrogenase	-	6e-5	At1g74470	geranylgeranyl reductase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At2g14660	815954	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	GmaAffx.73787.1.S1_at	BM525031	-	-	5e-2	At5g61605	unknown protein	C.G.	S.X.	Please select
0.27	9e-32	137	Hordeum vulgare	Contig12056_s_at	Contig12056	-	-	1e-1	At5g38720	unknown protein	C.G.	S.X.	Please select
0.33	2e-32	141	Oryza sativa	Os06g0694800	AK070249.1	-	Conserved hypothetical protein	2e+0	At5g43840	AT-HSFA6A	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	38	Populus trichocarpa	PtpAffx.213896.1.S1_at	pmrna27097	hypothetical protein	-	7e-1	At5g63087	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	1e-23	111	Triticum aestivum	Ta.10630.1.S1_at	BG909458	-	-	9e-3	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	6e-1	34	Vitis vinifera	1614635_at	CF519142	hypothetical protein LOC100250791	-	8e-2	At3g28540	AAA-type ATPase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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