Gene omics information

Query gene ID	Zm.7370.1.A1_at
Gene name	beta-expansin 1a
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.7370.1.A1_at	BM382341	beta-expansin 1a	-	5e-1	At1g20220	nucleic acid binding	S.X.	H.G.	Please select
0.50	65.7	Zm.11830.1.S1_at	CA398394	protein grpE	-	2e-3	At5g17710	EMB1241 (embryo defective 1241)	S.X.	H.G.	Please select
0.44	55.7	Zm.13584.1.A1_at	AY107853.1	-	-	1e-72	At1g21640	NADK2	S.X.	H.G.	Please select
0.12	5.9	Zm.14291.1.S1_at	BE056944	40S ribosomal protein S30	-	8e-18	At4g29390	40S ribosomal protein S30 (RPS30B)	S.X.	H.G.	Please select
0.09	4.0	Zm.19297.1.A1_at	CO524882	hypothetical protein LOC100193577	-	2e-2	At3g49800	BSD domain-containing protein	S.X.	H.G.	Please select
0.06	2.3	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	98.4	GSM202408	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
9.0	98.2	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.9	97.9	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.2	97.8	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM202401	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep4	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
6.7	97.6	GSM202400	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep4	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
6.7	97.6	GSM258182	B73 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.9	97.3	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.7	97.2	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM202409	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	737	Zm.674.1.S1_at	AF332179.1	beta-expansin 6	-	9e+0	At4g26470	calcium ion binding	C.G.	S.X.	Please select
0.42	6e-48	190	Zm.675.2.A1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.36	6e-48	190	Zm.675.2.S1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.18	5e-45	180	Zm.9566.1.S1_at	AF332180.1	beta-expansin 7	-	6e-1	At3g49630	2-oxoacid-dependent oxidase, putative	C.G.	S.X.	Please select
0.21	8e-38	157	Zm.13944.1.A1_at	AF332181.1	beta-expansin 8	-	5e-2	At5g55650	unknown protein	C.G.	S.X.	Please select
0.24	1e-36	153	Zm.13944.3.S1_a_at	AA072435	Beta-expansin 8	-	3e-3	At5g40630	ubiquitin family protein	C.G.	S.X.	Please select
0.13	1e-36	153	Zm.13944.3.A1_at	AF332175.1	Beta-expansin 8	-	3e-3	At1g27250	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select
0.30	7e-32	137	Zm.1747.1.A1_at	CF633743	-	-	5e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.28	3e-28	125	Zm.9565.1.A1_at	BM381516	beta-expansin 3	-	6e-1	At4g19270	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At1g20220	838610	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:plant-type cell wall;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	PsAffx.CL359Contig1_at	PsAffx.CL359Contig1	-	-	2e+0	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select
0.30	2e-44	178	Hordeum vulgare	Contig7394_at	Contig7394	-	-	1e+1	At5g54340	zinc finger (C2H2 type) protein-related	C.G.	S.X.	Please select
0.26	4e-40	167	Oryza sativa	Os10g0555600	AF261274.1	-	Beta-expansin precursor	4e-2	At3g06080	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.11043.1.A1_at	CV283336	hypothetical protein	-	1e+0	At4g28950	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	4e-57	222	Triticum aestivum	Ta.24120.1.S1_at	AY543541.1	expansin EXPB7	-	9e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1621500_at	CD799311	hypothetical protein LOC100250385	-	3e-2	At5g28750	thylakoid assembly protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage