Gene omics information

Query gene ID	Zm.7341.1.A1_at
Gene name	TFIIB-related protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	S.X.	H.G.	Please select
0.73	89.9	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	S.X.	H.G.	Please select
0.67	85.8	Zm.7073.2.A1_at	AI600777	-	-	1e-2	At5g37260	RVE2 (REVEILLE 2)	S.X.	H.G.	Please select
0.60	77.8	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.46	58.4	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.11269.1.A1_at	CK347607	EF hand family protein	-	6e+0	At2g22460	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.3	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-20	99	Zm.10457.1.A1_a_at	CK348001	cyclin-like F-box	-	1e-7	At2g32560	F-box family protein	C.G.	S.X.	Please select
0.05	6e-19	95	ZmAffx.486.1.A1_at	AI691392	-	-	3e+0	At5g14800	P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)	C.G.	S.X.	Please select
0.04	2e-6	54	Zm.17603.1.S1_at	CK371256	-	-	7e+0	At5g44920	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please select
0.07	8e-6	52	Zm.15742.1.A1_at	CD446346	-	-	8e+0	Atmg00820	-	C.G.	S.X.	Please select
0.05	1e-4	48	Zm.5718.1.A1_at	BM336876	hypothetical protein LOC100278767	-	6e+0	At5g66005	Expressed protein	C.G.	S.X.	Please select
0.03	2e-3	44	Zm.3472.1.S1_at	AI783224	-	-	4e+0	At2g37510	RNA-binding protein, putative	C.G.	S.X.	Please select
0.02	8e-3	42	Zm.9981.1.S1_at	BM332239	isopentenyl-diphosphate delta isomerase 2	-	7e-14	At2g05830	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select
0.04	3e-2	40	Zm.6872.1.A1_at	AI065521	-	-	2e+0	At1g27920	MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.3831.1.S1_at	CF627002	hypothetical protein LOC100274341	-	7e-6	At3g48560	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-14	81	Arabidopsis thaliana	At4g36650	829817	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	3e-2	42	Glycine max	PsAffx.C195000006_at	PsAffx.C195000006	-	-	2e+0	At2g36026	-	C.G.	S.X.	Please select
0.01	5e-1	36	Hordeum vulgare	Contig24971_at	Contig24971	-	-	7e-3	At3g01513	unknown protein	C.G.	S.X.	Please select
0.49	0	870	Oryza sativa	OsAffx.25033.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	2e-34	149	Populus trichocarpa	PtpAffx.207344.1.S1_at	pmrna14570	hypothetical protein	-	1e-102	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+0	36	Triticum aestivum	TaAffx.119271.1.S1_at	BJ279939	-	-	1e+0	At1g23540	protein kinase family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Vitis vinifera	1610860_at	CB972633	-	-	2e+0	At3g49550	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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