Gene omics information

Query gene ID	Zm.7309.1.S1_at
Gene name	nucleosome/chromatin assembly factor A
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.7309.1.S1_at	AF384036.1	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	S.X.	H.G.	Please select
0.53	69.1	Zm.1134.1.A1_at	AY112160.1	hypothetical protein LOC100193278	-	3e+0	At2g26940	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.18135.1.A1_at	CN845300	-	-	4e+0	Atmg01410	-	S.X.	H.G.	Please select
0.39	45.6	Zm.6555.2.S1_at	CD446565	hypothetical protein LOC100273907	-	1e-31	At3g11710	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)	S.X.	H.G.	Please select
0.30	29.8	Zm.18038.1.S1_at	CD219308	-	-	2e+1	At5g66700	HB53	S.X.	H.G.	Please select
0.24	19.8	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	97.6	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.3	97.4	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.2	97.4	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.0	96.7	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.8	96.6	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.7	96.5	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.7	96.5	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.6	96.4	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.5	96.3	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1590	Zm.7309.1.S1_s_at	AF384036.1	nucleosome/chromatin assembly factor A /// nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.77	0	1142	Zm.5918.1.A1_at	AF384035.1	nucleosome/chromatin assembly factor A	-	6e-4	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.8958.1.A1_at	CK370494	hypothetical protein LOC100274587	-	2e+0	At1g35320	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.888.1.S1_at	CK828040	hypothetical protein LOC100216750	-	1e-7	At1g08880	H2AXA	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.5881.1.A1_at	CA401815	-	-	9e-8	At2g16640	TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132)	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.3240.1.A1_at	CF018454	hypothetical protein LOC100216638	-	6e-31	At3g54560	HTA11	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.16816.1.S1_a_at	AY104056.1	hypothetical protein LOC100216551	-	2e-25	At3g54560	HTA11	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4397.1.S1_at	AI714503	hypothetical protein LOC100274308	-	2e+0	At5g62140	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.395.1.S1_at	U58209.1	Binding protein homolog2	-	1e-154	At5g42020	BIP2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-3	44	Arabidopsis thaliana	At1g18800	838462	NRP2 (NAP1-RELATED PROTEIN 2)	Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	8e-4	46	Glycine max	GmaAffx.71523.1.S1_at	BU544012	-	-	3e-33	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.57	5e-163	573	Hordeum vulgare	Contig3123_at	Contig3123	-	-	1e-4	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.52	6e-169	595	Oryza sativa	Os02g0576700	AK102294.1	-	Nucleosome assembly protein (NAP) family protein	2e-4	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	4e-12	73	Populus trichocarpa	Ptp.4592.1.S1_s_at	CV275994	nucleosome/chromatin assembly factor group	-	4e-8	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	8e-170	597	Triticum aestivum	Ta.28199.1.S1_at	BJ297475	-	-	2e-4	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.08	1e-5	50	Vitis vinifera	1607474_at	CD798521	hypothetical protein LOC100249121	-	2e-2	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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