Gene omics information

Query gene ID	Zm.7159.1.A1_at
Gene name	hypothetical protein LOC100276523
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	67.3	Zm.7159.1.A1_at	CF972430	hypothetical protein LOC100276523	-	1e+0	At3g04770	RPSAb (40S ribosomal protein SA B)	S.X.	H.G.	Please select
0.44	55.7	Zm.8743.1.A1_at	BM347268	blue copper protein	-	1e-1	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.13	6.8	Zm.1967.1.A1_at	BG836522	pathogenesis-related protein 10 /// pathogenesis-related protein 1	-	1e-23	At1g77180	chromatin protein family	S.X.	H.G.	Please select
0.10	4.6	Zm.9880.2.A1_at	AY110782.1	-	-	1e+0	At5g57310	unknown protein	S.X.	H.G.	Please select
0.04	1.5	Zm.1786.1.S1_at	BG842293	PHD finger-like domain-containing protein 5A	-	9e-27	At1g07170	-	S.X.	H.G.	Please select
0.02	0.7	Zm.4601.1.A1_at	BQ539109	-	-	2e+0	At4g21585	ENDO4 (endonuclease 4)	S.X.	H.G.	Please select
0.02	0.7	Zm.10789.1.S1_at	AI665421	zinc finger, C3HC4 type family protein	-	1e-8	At1g11020	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.7	99.8	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
30.9	99.8	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
23.3	99.5	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
22.6	99.5	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
20.8	99.4	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
19.9	99.3	GSM375797	Deep-sowing 10d treatment UCZ, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
15.4	99.0	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
14.7	98.9	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
8.6	98.1	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.4	97.8	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-28	125	ZmAffx.1145.1.A1_at	AW400072	-	-	1e-2	At1g67570	unknown protein	C.G.	S.X.	Please select
0.31	2e-28	125	ZmAffx.1145.1.S1_at	AW400072	hypothetical protein LOC100278076	-	1e-2	At1g67570	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5191.1.A1_at	CA404159	-	-	4e+0	At3g28820	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.16467.1.A1_at	AF269064.1	restorer of fertility2	-	1e-49	At1g23800	ALDH2B7	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.1301.1.S1_at	40794996-29	-	-	2e-13	Atmg00180	-	C.G.	S.X.	Please select
0.01	9e+0	30	ZmAffx.1300.1.S1_at	40794996-28	-	-	0	Atmg00180	-	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.9561.1.A1_at	AW433482	calmodulin binding protein	-	7e-7	At5g57580	calmodulin-binding protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.8183.1.A1_at	BM073193	-	-	1e+0	At4g17980	anac071 (Arabidopsis NAC domain containing protein 71)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At3g04770	819637	RPSAb (40S ribosomal protein SA B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;BMOAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.9493.1.S1_at	CA820384	-	-	3e-4	At3g21640	TWD1 (TWISTED DWARF 1)	C.G.	S.X.	Please select
0.37	5e-51	200	Hordeum vulgare	Contig17071_at	Contig17071	-	-	2e+0	At1g74370	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.07	2e-19	97	Oryza sativa	Os11g0683500	AK067619.1	-	Glycoside hydrolase, family 1 protein	6e-9	At3g06510	SFR2 (SENSITIVE TO FREEZING 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.15423.1.A1_at	CK094814	sodium proton exchanger	-	3e-1	At3g48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.20804.3.S1_at	CA629531	-	-	4e+0	At3g29780	RALFL27 (ralf-like 27)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1609371_at	CF213667	hypothetical protein LOC100252736	-	1e+0	At2g33740	CUTA	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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