Gene omics information

Query gene ID	Zm.7150.3.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.7150.3.S1_at	AY109249.1	-	-	2e+0	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.67	85.8	Zm.13539.1.A1_at	AY108296.1	-	-	5e+0	At2g13450	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.264.2.A1_x_at	CF012670	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.17102.1.A1_at	CD527578	Histone H3.2	-	4e-29	At1g09200	histone H3	S.X.	H.G.	Please select
0.40	48.5	Zm.10865.1.A1_at	CF638037	hypothetical protein LOC100275271	-	1e-6	At2g44090	-	S.X.	H.G.	Please select
0.29	28.1	Zm.6328.1.A1_at	AY104064.1	hypothetical protein LOC100279888	-	3e+0	At4g38060	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.4	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.1	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.0	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1610	Zm.7150.3.A1_a_at	AY109249.1	induced stolen tip protein TUB8	-	2e+0	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	C.G.	S.X.	Please select
1.00	0	1610	Zm.7150.3.A1_x_at	AY109249.1	-	-	2e+0	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.26	1e-147	521	Zm.7150.1.A1_a_at	AY103659.1	induced stolen tip protein TUB8	-	2e-1	At4g33410	signal peptide peptidase family protein	C.G.	S.X.	Please select
0.26	1e-147	521	Zm.7150.1.A1_x_at	AY103659.1	-	-	2e-1	At4g33410	signal peptide peptidase family protein	C.G.	S.X.	Please select
0.33	2e-87	321	Zm.7150.2.A1_a_at	CK370688	hypothetical protein LOC100279278	-	9e-8	At5g15470	GAUT14 (Galacturonosyltransferase 14)	C.G.	S.X.	Please select
0.33	2e-87	321	Zm.7150.2.A1_x_at	CK370688	hypothetical protein LOC100279278	-	9e-8	At5g15470	GAUT14 (Galacturonosyltransferase 14)	C.G.	S.X.	Please select
0.33	2e-87	321	Zm.7150.2.A1_at	CK370688	hypothetical protein LOC100279278	-	9e-8	At5g15470	GAUT14 (Galacturonosyltransferase 14)	C.G.	S.X.	Please select
0.12	3e-43	174	Zm.7150.4.A1_x_at	BQ487226	hypothetical protein LOC100277393 /// induced stolen tip protein TUB8 /// induced stolen tip protein TUB8	-	3e-2	At5g24580	copper-binding family protein	C.G.	S.X.	Please select
0.09	1e-27	123	Zm.4510.1.A1_a_at	CF636202	hypothetical protein LOC100277304	-	6e-1	At5g24879	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g29575	822619	AFP3 (ABI FIVE BINDING PROTEIN 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.C2000055_at	PsAffx.C2000055	-	-	5e-1	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	3e-3	42	Hordeum vulgare	Contig9977_at	Contig9977	-	-	2e-2	At5g49550	unknown protein	C.G.	S.X.	Please select
0.03	2e-10	67	Oryza sativa	Os.8792.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	6e-1	36	Populus trichocarpa	Ptp.2749.1.S1_at	DN500448	-	-	8e+0	At4g11890	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	2e-74	280	Triticum aestivum	TaAffx.112669.7.S1_s_at	CA621161	-	-	8e-1	At5g60520	late embryogenesis abundant protein-related / LEA protein-related	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1621606_at	CD005498	hypothetical protein LOC100256585	-	2e-2	At4g37090	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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